Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC31.1■■■□□ 2.57
COL3A1P02461 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
COL3A1P02461 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
COL3A1P02461 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
COL3A1P02461 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
COL3A1P02461 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
COL3A1P02461 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
COL3A1P02461 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC31.09■■■□□ 2.57
COL3A1P02461 AC022211.4-201ENST00000625094 2161 ntBASIC31.09■■■□□ 2.57
COL3A1P02461 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC31.08■■■□□ 2.57
COL3A1P02461 TSPY9P-201ENST00000440215 945 ntBASIC31.08■■■□□ 2.57
COL3A1P02461 TSPY11P-201ENST00000442607 1045 ntBASIC31.08■■■□□ 2.57
COL3A1P02461 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC31.08■■■□□ 2.57
COL3A1P02461 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
COL3A1P02461 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
COL3A1P02461 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC31.08■■■□□ 2.57
COL3A1P02461 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC31.08■■■□□ 2.57
COL3A1P02461 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC31.08■■■□□ 2.57
COL3A1P02461 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
COL3A1P02461 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC31.08■■■□□ 2.57
COL3A1P02461 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC31.08■■■□□ 2.57
COL3A1P02461 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC31.08■■■□□ 2.57
COL3A1P02461 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC31.08■■■□□ 2.57
COL3A1P02461 LBH-205ENST00000407930 756 ntTSL 2 BASIC31.08■■■□□ 2.57
COL3A1P02461 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC31.08■■■□□ 2.57
COL3A1P02461 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC31.08■■■□□ 2.57
COL3A1P02461 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
COL3A1P02461 AC020928.2-201ENST00000588717 2197 ntBASIC31.07■■■□□ 2.56
COL3A1P02461 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
COL3A1P02461 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
COL3A1P02461 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
COL3A1P02461 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
COL3A1P02461 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
COL3A1P02461 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
COL3A1P02461 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC31.07■■■□□ 2.56
COL3A1P02461 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC31.07■■■□□ 2.56
COL3A1P02461 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC31.07■■■□□ 2.56
COL3A1P02461 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC31.07■■■□□ 2.56
COL3A1P02461 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
COL3A1P02461 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC31.06■■■□□ 2.56
COL3A1P02461 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC31.06■■■□□ 2.56
COL3A1P02461 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC31.06■■■□□ 2.56
COL3A1P02461 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC31.06■■■□□ 2.56
COL3A1P02461 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC31.06■■■□□ 2.56
COL3A1P02461 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC31.06■■■□□ 2.56
COL3A1P02461 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
COL3A1P02461 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC31.05■■■□□ 2.56
COL3A1P02461 LSM4-201ENST00000252816 986 ntTSL 2 BASIC31.05■■■□□ 2.56
COL3A1P02461 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC31.05■■■□□ 2.56
COL3A1P02461 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC31.05■■■□□ 2.56
COL3A1P02461 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC31.05■■■□□ 2.56
COL3A1P02461 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
COL3A1P02461 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
COL3A1P02461 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC31.04■■■□□ 2.56
COL3A1P02461 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC31.04■■■□□ 2.56
COL3A1P02461 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC31.04■■■□□ 2.56
COL3A1P02461 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC31.04■■■□□ 2.56
COL3A1P02461 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC31.03■■■□□ 2.56
COL3A1P02461 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC31.03■■■□□ 2.56
COL3A1P02461 CLTA-206ENST00000466396 695 ntTSL 2 BASIC31.03■■■□□ 2.56
COL3A1P02461 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC31.03■■■□□ 2.56
COL3A1P02461 CLTA-210ENST00000540080 989 ntTSL 2 BASIC31.03■■■□□ 2.56
COL3A1P02461 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC31.03■■■□□ 2.56
COL3A1P02461 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC31.03■■■□□ 2.56
COL3A1P02461 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC31.03■■■□□ 2.56
COL3A1P02461 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
COL3A1P02461 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
COL3A1P02461 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
COL3A1P02461 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
COL3A1P02461 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
COL3A1P02461 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC31.01■■■□□ 2.56
COL3A1P02461 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC31.01■■■□□ 2.56
COL3A1P02461 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC31.01■■■□□ 2.56
COL3A1P02461 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC31.01■■■□□ 2.56
COL3A1P02461 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
COL3A1P02461 MTDHP2-201ENST00000601468 714 ntBASIC31.01■■■□□ 2.55
COL3A1P02461 MED17-227ENST00000640521 2047 ntTSL 5 BASIC31.01■■■□□ 2.55
COL3A1P02461 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC31■■■□□ 2.55
COL3A1P02461 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
COL3A1P02461 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC31■■■□□ 2.55
COL3A1P02461 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC31■■■□□ 2.55
COL3A1P02461 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC31■■■□□ 2.55
COL3A1P02461 AC138932.3-201ENST00000567634 1902 ntBASIC31■■■□□ 2.55
COL3A1P02461 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC30.99■■■□□ 2.55
COL3A1P02461 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
COL3A1P02461 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
COL3A1P02461 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC30.99■■■□□ 2.55
COL3A1P02461 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC30.99■■■□□ 2.55
COL3A1P02461 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
COL3A1P02461 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
COL3A1P02461 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC30.99■■■□□ 2.55
COL3A1P02461 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC30.99■■■□□ 2.55
COL3A1P02461 AC142381.3-201ENST00000568208 1670 ntBASIC30.98■■■□□ 2.55
COL3A1P02461 AC131212.1-201ENST00000613771 668 ntBASIC30.98■■■□□ 2.55
COL3A1P02461 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC30.98■■■□□ 2.55
COL3A1P02461 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC30.98■■■□□ 2.55
COL3A1P02461 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC30.98■■■□□ 2.55
COL3A1P02461 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC30.98■■■□□ 2.55
COL3A1P02461 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
COL3A1P02461 AL117332.1-201ENST00000622628 974 ntBASIC30.97■■■□□ 2.55
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms