Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC22.34■■□□□ 1.17
SLC28A1O00337 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC22.34■■□□□ 1.17
SLC28A1O00337 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC22.34■■□□□ 1.17
SLC28A1O00337 SPCS2P3-201ENST00000500401 656 ntBASIC22.33■■□□□ 1.17
SLC28A1O00337 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
SLC28A1O00337 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC22.33■■□□□ 1.17
SLC28A1O00337 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC22.33■■□□□ 1.16
SLC28A1O00337 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
SLC28A1O00337 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC22.33■■□□□ 1.16
SLC28A1O00337 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC22.32■■□□□ 1.16
SLC28A1O00337 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SLC28A1O00337 IDNK-203ENST00000405990 629 ntTSL 2 BASIC22.32■■□□□ 1.16
SLC28A1O00337 AC087393.1-201ENST00000582896 145 ntBASIC22.32■■□□□ 1.16
SLC28A1O00337 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
SLC28A1O00337 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
SLC28A1O00337 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC22.32■■□□□ 1.16
SLC28A1O00337 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC22.32■■□□□ 1.16
SLC28A1O00337 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
SLC28A1O00337 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC22.31■■□□□ 1.16
SLC28A1O00337 AL592295.1-201ENST00000400984 884 ntBASIC22.31■■□□□ 1.16
SLC28A1O00337 MIR6765-201ENST00000614092 87 ntBASIC22.31■■□□□ 1.16
SLC28A1O00337 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
SLC28A1O00337 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC22.3■■□□□ 1.16
SLC28A1O00337 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SLC28A1O00337 AC090877.2-201ENST00000558441 1738 ntBASIC22.3■■□□□ 1.16
SLC28A1O00337 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC22.3■■□□□ 1.16
SLC28A1O00337 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
SLC28A1O00337 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SLC28A1O00337 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
SLC28A1O00337 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC22.29■■□□□ 1.16
SLC28A1O00337 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
SLC28A1O00337 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
SLC28A1O00337 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC22.29■■□□□ 1.16
SLC28A1O00337 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
SLC28A1O00337 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC22.29■■□□□ 1.16
SLC28A1O00337 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
SLC28A1O00337 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
SLC28A1O00337 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
SLC28A1O00337 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC22.28■■□□□ 1.16
SLC28A1O00337 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SLC28A1O00337 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
SLC28A1O00337 SSSCA1-AS1-201ENST00000567594 614 ntBASIC22.28■■□□□ 1.16
SLC28A1O00337 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC22.28■■□□□ 1.16
SLC28A1O00337 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
SLC28A1O00337 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
SLC28A1O00337 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
SLC28A1O00337 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
SLC28A1O00337 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
SLC28A1O00337 RARRES2P2-201ENST00000394842 485 ntBASIC22.27■■□□□ 1.16
SLC28A1O00337 DUX4L9-201ENST00000449051 1259 ntBASIC22.27■■□□□ 1.16
SLC28A1O00337 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC22.27■■□□□ 1.16
SLC28A1O00337 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC22.27■■□□□ 1.16
SLC28A1O00337 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.15
SLC28A1O00337 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC22.26■■□□□ 1.15
SLC28A1O00337 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
SLC28A1O00337 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
SLC28A1O00337 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
SLC28A1O00337 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
SLC28A1O00337 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
SLC28A1O00337 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC22.26■■□□□ 1.15
SLC28A1O00337 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC22.26■■□□□ 1.15
SLC28A1O00337 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
SLC28A1O00337 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC22.26■■□□□ 1.15
SLC28A1O00337 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
SLC28A1O00337 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
SLC28A1O00337 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
SLC28A1O00337 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
SLC28A1O00337 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC22.25■■□□□ 1.15
SLC28A1O00337 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC22.25■■□□□ 1.15
SLC28A1O00337 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
SLC28A1O00337 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
SLC28A1O00337 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
SLC28A1O00337 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
SLC28A1O00337 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
SLC28A1O00337 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SLC28A1O00337 CASK-201ENST00000378154 2494 ntTSL 5 BASIC22.24■■□□□ 1.15
SLC28A1O00337 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
SLC28A1O00337 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC22.24■■□□□ 1.15
SLC28A1O00337 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
SLC28A1O00337 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC22.24■■□□□ 1.15
SLC28A1O00337 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SLC28A1O00337 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC22.24■■□□□ 1.15
SLC28A1O00337 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC22.24■■□□□ 1.15
SLC28A1O00337 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
SLC28A1O00337 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC22.24■■□□□ 1.15
SLC28A1O00337 DUSP8P5-201ENST00000422884 1815 ntBASIC22.24■■□□□ 1.15
SLC28A1O00337 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC22.24■■□□□ 1.15
SLC28A1O00337 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SLC28A1O00337 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC22.23■■□□□ 1.15
SLC28A1O00337 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC22.23■■□□□ 1.15
SLC28A1O00337 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
SLC28A1O00337 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
SLC28A1O00337 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
SLC28A1O00337 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
SLC28A1O00337 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
SLC28A1O00337 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
SLC28A1O00337 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
SLC28A1O00337 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
SLC28A1O00337 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
SLC28A1O00337 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC22.23■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms