Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC18.21■□□□□ 0.51
TRAV1-1A0A0B4J248 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRAV1-1A0A0B4J248 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
TRAV1-1A0A0B4J248 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRAV1-1A0A0B4J248 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC18.21■□□□□ 0.51
TRAV1-1A0A0B4J248 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRAV1-1A0A0B4J248 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
TRAV1-1A0A0B4J248 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC18.21■□□□□ 0.51
TRAV1-1A0A0B4J248 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRAV1-1A0A0B4J248 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
TRAV1-1A0A0B4J248 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC18.2■□□□□ 0.5
TRAV1-1A0A0B4J248 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
TRAV1-1A0A0B4J248 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRAV1-1A0A0B4J248 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRAV1-1A0A0B4J248 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRAV1-1A0A0B4J248 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRAV1-1A0A0B4J248 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
TRAV1-1A0A0B4J248 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRAV1-1A0A0B4J248 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
TRAV1-1A0A0B4J248 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRAV1-1A0A0B4J248 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRAV1-1A0A0B4J248 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TRAV1-1A0A0B4J248 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TRAV1-1A0A0B4J248 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TRAV1-1A0A0B4J248 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
TRAV1-1A0A0B4J248 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC18.19■□□□□ 0.5
TRAV1-1A0A0B4J248 AC007375.3-201ENST00000600936 2314 ntBASIC18.18■□□□□ 0.5
TRAV1-1A0A0B4J248 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV1-1A0A0B4J248 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV1-1A0A0B4J248 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
TRAV1-1A0A0B4J248 FOXO3B-201ENST00000395675 1928 ntBASIC18.18■□□□□ 0.5
TRAV1-1A0A0B4J248 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV1-1A0A0B4J248 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV1-1A0A0B4J248 ANOS2P-203ENST00000472227 1816 ntBASIC18.18■□□□□ 0.5
TRAV1-1A0A0B4J248 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
TRAV1-1A0A0B4J248 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV1-1A0A0B4J248 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRAV1-1A0A0B4J248 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV1-1A0A0B4J248 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV1-1A0A0B4J248 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV1-1A0A0B4J248 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV1-1A0A0B4J248 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC18.17■□□□□ 0.5
TRAV1-1A0A0B4J248 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV1-1A0A0B4J248 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV1-1A0A0B4J248 AC092068.2-201ENST00000590491 1708 ntBASIC18.17■□□□□ 0.5
TRAV1-1A0A0B4J248 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRAV1-1A0A0B4J248 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
TRAV1-1A0A0B4J248 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV1-1A0A0B4J248 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV1-1A0A0B4J248 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV1-1A0A0B4J248 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
TRAV1-1A0A0B4J248 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV1-1A0A0B4J248 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
TRAV1-1A0A0B4J248 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV1-1A0A0B4J248 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV1-1A0A0B4J248 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV1-1A0A0B4J248 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV1-1A0A0B4J248 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV1-1A0A0B4J248 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRAV1-1A0A0B4J248 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV1-1A0A0B4J248 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV1-1A0A0B4J248 AC097358.2-201ENST00000607541 1159 ntBASIC18.15■□□□□ 0.5
TRAV1-1A0A0B4J248 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV1-1A0A0B4J248 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV1-1A0A0B4J248 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV1-1A0A0B4J248 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC18.15■□□□□ 0.5
TRAV1-1A0A0B4J248 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRAV1-1A0A0B4J248 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC18.14■□□□□ 0.5
TRAV1-1A0A0B4J248 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
TRAV1-1A0A0B4J248 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
TRAV1-1A0A0B4J248 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC18.14■□□□□ 0.49
TRAV1-1A0A0B4J248 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRAV1-1A0A0B4J248 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TRAV1-1A0A0B4J248 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC18.14■□□□□ 0.49
TRAV1-1A0A0B4J248 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC18.14■□□□□ 0.49
TRAV1-1A0A0B4J248 CIB2-204ENST00000557846 934 ntTSL 3 BASIC18.14■□□□□ 0.49
TRAV1-1A0A0B4J248 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TRAV1-1A0A0B4J248 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
TRAV1-1A0A0B4J248 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRAV1-1A0A0B4J248 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC18.14■□□□□ 0.49
TRAV1-1A0A0B4J248 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
TRAV1-1A0A0B4J248 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRAV1-1A0A0B4J248 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
TRAV1-1A0A0B4J248 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TRAV1-1A0A0B4J248 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV1-1A0A0B4J248 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TRAV1-1A0A0B4J248 TERT-206ENST00000508104 2486 ntTSL 5 BASIC18.13■□□□□ 0.49
TRAV1-1A0A0B4J248 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC18.13■□□□□ 0.49
TRAV1-1A0A0B4J248 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV1-1A0A0B4J248 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV1-1A0A0B4J248 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
TRAV1-1A0A0B4J248 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV1-1A0A0B4J248 HNRNPLP2-201ENST00000568980 1570 ntBASIC18.12■□□□□ 0.49
TRAV1-1A0A0B4J248 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TRAV1-1A0A0B4J248 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
TRAV1-1A0A0B4J248 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV1-1A0A0B4J248 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV1-1A0A0B4J248 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
TRAV1-1A0A0B4J248 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRAV1-1A0A0B4J248 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms