Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC29.17■■■□□ 2.26
SHROOM4Q9ULL8 MSRA-203ENST00000441698 788 ntTSL 2 BASIC29.17■■■□□ 2.26
SHROOM4Q9ULL8 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
SHROOM4Q9ULL8 RN7SL11P-201ENST00000471305 293 ntBASIC29.17■■■□□ 2.26
SHROOM4Q9ULL8 NCK2-206ENST00000522586 490 ntTSL 5 BASIC29.17■■■□□ 2.26
SHROOM4Q9ULL8 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC29.17■■■□□ 2.26
SHROOM4Q9ULL8 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC29.17■■■□□ 2.26
SHROOM4Q9ULL8 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC29.17■■■□□ 2.26
SHROOM4Q9ULL8 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC29.17■■■□□ 2.26
SHROOM4Q9ULL8 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC29.17■■■□□ 2.26
SHROOM4Q9ULL8 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC29.17■■■□□ 2.26
SHROOM4Q9ULL8 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC29.17■■■□□ 2.26
SHROOM4Q9ULL8 AC090340.1-201ENST00000620778 4980 ntBASIC29.17■■■□□ 2.26
SHROOM4Q9ULL8 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC29.17■■■□□ 2.26
SHROOM4Q9ULL8 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC29.17■■■□□ 2.26
SHROOM4Q9ULL8 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
SHROOM4Q9ULL8 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
SHROOM4Q9ULL8 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
SHROOM4Q9ULL8 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
SHROOM4Q9ULL8 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
SHROOM4Q9ULL8 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC29.17■■■□□ 2.26
SHROOM4Q9ULL8 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
SHROOM4Q9ULL8 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC29.17■■■□□ 2.26
SHROOM4Q9ULL8 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
SHROOM4Q9ULL8 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
SHROOM4Q9ULL8 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC29.16■■■□□ 2.26
SHROOM4Q9ULL8 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
SHROOM4Q9ULL8 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC29.16■■■□□ 2.26
SHROOM4Q9ULL8 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
SHROOM4Q9ULL8 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC29.16■■■□□ 2.26
SHROOM4Q9ULL8 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
SHROOM4Q9ULL8 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
SHROOM4Q9ULL8 AC020916.1-201ENST00000587762 1774 ntBASIC29.16■■■□□ 2.26
SHROOM4Q9ULL8 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
SHROOM4Q9ULL8 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC29.16■■■□□ 2.26
SHROOM4Q9ULL8 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC29.16■■■□□ 2.26
SHROOM4Q9ULL8 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC29.16■■■□□ 2.26
SHROOM4Q9ULL8 NDUFAB1P1-201ENST00000404262 460 ntBASIC29.16■■■□□ 2.26
SHROOM4Q9ULL8 TISP43-201ENST00000409793 538 ntTSL 4 BASIC29.16■■■□□ 2.26
SHROOM4Q9ULL8 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC29.16■■■□□ 2.26
SHROOM4Q9ULL8 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
SHROOM4Q9ULL8 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC29.16■■■□□ 2.26
SHROOM4Q9ULL8 NPM1P43-201ENST00000558669 786 ntBASIC29.16■■■□□ 2.26
SHROOM4Q9ULL8 AC007663.3-201ENST00000609632 465 ntBASIC29.16■■■□□ 2.26
SHROOM4Q9ULL8 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC29.16■■■□□ 2.26
SHROOM4Q9ULL8 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
SHROOM4Q9ULL8 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC29.15■■■□□ 2.26
SHROOM4Q9ULL8 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC29.15■■■□□ 2.26
SHROOM4Q9ULL8 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
SHROOM4Q9ULL8 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC29.15■■■□□ 2.26
SHROOM4Q9ULL8 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
SHROOM4Q9ULL8 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
SHROOM4Q9ULL8 PRAL-201ENST00000624952 3286 ntBASIC29.15■■■□□ 2.26
SHROOM4Q9ULL8 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC29.15■■■□□ 2.26
SHROOM4Q9ULL8 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC29.15■■■□□ 2.26
SHROOM4Q9ULL8 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC29.15■■■□□ 2.26
SHROOM4Q9ULL8 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC29.15■■■□□ 2.26
SHROOM4Q9ULL8 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC29.15■■■□□ 2.26
SHROOM4Q9ULL8 AL161670.2-201ENST00000557650 1227 ntBASIC29.15■■■□□ 2.26
SHROOM4Q9ULL8 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC29.15■■■□□ 2.26
SHROOM4Q9ULL8 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
SHROOM4Q9ULL8 TBCB-211ENST00000589996 724 ntTSL 3 BASIC29.15■■■□□ 2.26
SHROOM4Q9ULL8 AL133499.1-201ENST00000596207 608 ntBASIC29.15■■■□□ 2.26
SHROOM4Q9ULL8 ETV2-208ENST00000621247 941 ntTSL 5 BASIC29.15■■■□□ 2.26
SHROOM4Q9ULL8 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC29.15■■■□□ 2.26
SHROOM4Q9ULL8 AL354989.2-201ENST00000435838 1540 ntBASIC29.15■■■□□ 2.26
SHROOM4Q9ULL8 TUBBP5-203ENST00000508529 1334 ntBASIC29.15■■■□□ 2.26
SHROOM4Q9ULL8 AC148477.4-201ENST00000613430 1793 ntBASIC29.15■■■□□ 2.26
SHROOM4Q9ULL8 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
SHROOM4Q9ULL8 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC29.14■■■□□ 2.26
SHROOM4Q9ULL8 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC29.14■■■□□ 2.26
SHROOM4Q9ULL8 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
SHROOM4Q9ULL8 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC29.14■■■□□ 2.26
SHROOM4Q9ULL8 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
SHROOM4Q9ULL8 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC29.14■■■□□ 2.26
SHROOM4Q9ULL8 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC29.14■■■□□ 2.26
SHROOM4Q9ULL8 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC29.14■■■□□ 2.26
SHROOM4Q9ULL8 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC29.14■■■□□ 2.26
SHROOM4Q9ULL8 AC013355.1-201ENST00000562625 723 ntBASIC29.14■■■□□ 2.26
SHROOM4Q9ULL8 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC29.14■■■□□ 2.26
SHROOM4Q9ULL8 AF254983.2-201ENST00000612331 135 ntBASIC29.14■■■□□ 2.26
SHROOM4Q9ULL8 HLA-C-210ENST00000640219 976 ntBASIC29.14■■■□□ 2.26
SHROOM4Q9ULL8 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
SHROOM4Q9ULL8 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.25
SHROOM4Q9ULL8 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.25
SHROOM4Q9ULL8 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC29.14■■■□□ 2.25
SHROOM4Q9ULL8 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC29.13■■■□□ 2.25
SHROOM4Q9ULL8 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
SHROOM4Q9ULL8 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC29.13■■■□□ 2.25
SHROOM4Q9ULL8 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC29.13■■■□□ 2.25
SHROOM4Q9ULL8 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC29.13■■■□□ 2.25
SHROOM4Q9ULL8 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
SHROOM4Q9ULL8 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
SHROOM4Q9ULL8 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
SHROOM4Q9ULL8 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC29.13■■■□□ 2.25
SHROOM4Q9ULL8 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC29.13■■■□□ 2.25
SHROOM4Q9ULL8 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC29.13■■■□□ 2.25
SHROOM4Q9ULL8 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC29.13■■■□□ 2.25
SHROOM4Q9ULL8 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC29.13■■■□□ 2.25
SHROOM4Q9ULL8 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC29.13■■■□□ 2.25
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms