Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC16.21■□□□□ 0.19
LIMD1Q9UGP4 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIMD1Q9UGP4 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.19
LIMD1Q9UGP4 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIMD1Q9UGP4 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC16.21■□□□□ 0.19
LIMD1Q9UGP4 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIMD1Q9UGP4 FRMD6-AS1-201ENST00000617151 2229 ntBASIC16.21■□□□□ 0.19
LIMD1Q9UGP4 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
LIMD1Q9UGP4 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIMD1Q9UGP4 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIMD1Q9UGP4 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC16.21■□□□□ 0.19
LIMD1Q9UGP4 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC16.21■□□□□ 0.19
LIMD1Q9UGP4 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC16.21■□□□□ 0.19
LIMD1Q9UGP4 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
LIMD1Q9UGP4 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIMD1Q9UGP4 EIF4HP1-201ENST00000453115 687 ntBASIC16.21■□□□□ 0.19
LIMD1Q9UGP4 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC16.21■□□□□ 0.19
LIMD1Q9UGP4 NAT9-222ENST00000583476 583 ntTSL 3 BASIC16.21■□□□□ 0.19
LIMD1Q9UGP4 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LIMD1Q9UGP4 AC008686.1-203ENST00000591826 463 ntTSL 2 BASIC16.21■□□□□ 0.19
LIMD1Q9UGP4 AC020914.3-201ENST00000594712 304 ntBASIC16.21■□□□□ 0.19
LIMD1Q9UGP4 KC6-205ENST00000599934 556 ntTSL 4 BASIC16.21■□□□□ 0.19
LIMD1Q9UGP4 AC010326.4-201ENST00000604665 891 ntBASIC16.21■□□□□ 0.19
LIMD1Q9UGP4 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LIMD1Q9UGP4 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC16.21■□□□□ 0.19
LIMD1Q9UGP4 AC132938.4-201ENST00000623835 848 ntBASIC16.21■□□□□ 0.19
LIMD1Q9UGP4 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC16.21■□□□□ 0.19
LIMD1Q9UGP4 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC16.21■□□□□ 0.19
LIMD1Q9UGP4 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LIMD1Q9UGP4 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC16.21■□□□□ 0.19
LIMD1Q9UGP4 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.21■□□□□ 0.19
LIMD1Q9UGP4 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.21■□□□□ 0.19
LIMD1Q9UGP4 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC16.21■□□□□ 0.19
LIMD1Q9UGP4 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIMD1Q9UGP4 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
LIMD1Q9UGP4 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC16.21■□□□□ 0.18
LIMD1Q9UGP4 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.18
LIMD1Q9UGP4 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.18
LIMD1Q9UGP4 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
LIMD1Q9UGP4 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC16.21■□□□□ 0.18
LIMD1Q9UGP4 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC16.21■□□□□ 0.18
LIMD1Q9UGP4 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
LIMD1Q9UGP4 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC16.21■□□□□ 0.18
LIMD1Q9UGP4 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 KRTAP10-13P-201ENST00000412914 571 ntBASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 MTX1P1-201ENST00000440904 838 ntBASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 BX284668.4-201ENST00000453917 508 ntBASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 UPF3AP2-201ENST00000457924 1132 ntBASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 RPSAP36-202ENST00000494591 1261 ntBASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 RERG-205ENST00000537647 935 ntTSL 2 BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 HCG18-245ENST00000602550 559 ntTSL 4 BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 AL450472.2-201ENST00000603663 1156 ntBASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIMD1Q9UGP4 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC16.19■□□□□ 0.18
LIMD1Q9UGP4 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC16.19■□□□□ 0.18
LIMD1Q9UGP4 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms