Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 AC005498.2-205ENST00000593218 784 ntBASIC16.62■□□□□ 0.25
SIX2Q9NPC8 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 AC106028.4-201ENST00000614509 607 ntBASIC16.62■□□□□ 0.25
SIX2Q9NPC8 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 TMPRSS11CP-201ENST00000453277 683 ntBASIC16.61■□□□□ 0.25
SIX2Q9NPC8 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SIX2Q9NPC8 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 AC104794.3-201ENST00000566840 1248 ntBASIC16.6■□□□□ 0.25
SIX2Q9NPC8 SAMD11P1-201ENST00000571429 661 ntBASIC16.6■□□□□ 0.25
SIX2Q9NPC8 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SIX2Q9NPC8 AC023908.3-201ENST00000564211 3047 ntBASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms