Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 AL157871.1-201ENST00000555428 429 ntTSL 3 BASIC15.28■□□□□ 0.04
COL25A1Q9BXS0 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
COL25A1Q9BXS0 MIR3188-201ENST00000583494 85 ntBASIC15.28■□□□□ 0.04
COL25A1Q9BXS0 AC006116.2-201ENST00000589958 988 ntBASIC15.28■□□□□ 0.04
COL25A1Q9BXS0 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC15.28■□□□□ 0.04
COL25A1Q9BXS0 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC15.28■□□□□ 0.04
COL25A1Q9BXS0 CSTP2-201ENST00000610599 398 ntBASIC15.28■□□□□ 0.04
COL25A1Q9BXS0 RDM1-216ENST00000613308 779 ntAPPRIS ALT2 TSL 3 BASIC15.28■□□□□ 0.04
COL25A1Q9BXS0 AL603764.1-201ENST00000636452 321 ntBASIC15.28■□□□□ 0.04
COL25A1Q9BXS0 AP000769.1-203ENST00000637245 208 ntBASIC15.28■□□□□ 0.04
COL25A1Q9BXS0 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL25A1Q9BXS0 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL25A1Q9BXS0 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC15.28■□□□□ 0.04
COL25A1Q9BXS0 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
COL25A1Q9BXS0 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL25A1Q9BXS0 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL25A1Q9BXS0 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL25A1Q9BXS0 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL25A1Q9BXS0 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
COL25A1Q9BXS0 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC15.28■□□□□ 0.04
COL25A1Q9BXS0 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC15.28■□□□□ 0.04
COL25A1Q9BXS0 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
COL25A1Q9BXS0 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL25A1Q9BXS0 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC15.27■□□□□ 0.04
COL25A1Q9BXS0 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL25A1Q9BXS0 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL25A1Q9BXS0 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC15.27■□□□□ 0.04
COL25A1Q9BXS0 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL25A1Q9BXS0 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL25A1Q9BXS0 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL25A1Q9BXS0 NF2-208ENST00000403435 2568 ntTSL 5 BASIC15.27■□□□□ 0.04
COL25A1Q9BXS0 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL25A1Q9BXS0 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC15.27■□□□□ 0.04
COL25A1Q9BXS0 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
COL25A1Q9BXS0 AL121949.1-201ENST00000402043 968 ntBASIC15.27■□□□□ 0.04
COL25A1Q9BXS0 THAP4-203ENST00000402545 833 ntTSL 5 BASIC15.27■□□□□ 0.04
COL25A1Q9BXS0 SERF2-209ENST00000409646 559 ntTSL 4 BASIC15.27■□□□□ 0.04
COL25A1Q9BXS0 KRT18P44-201ENST00000416086 1285 ntBASIC15.27■□□□□ 0.04
COL25A1Q9BXS0 CDCA4P4-201ENST00000435216 680 ntBASIC15.27■□□□□ 0.04
COL25A1Q9BXS0 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC15.27■□□□□ 0.04
COL25A1Q9BXS0 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
COL25A1Q9BXS0 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC15.27■□□□□ 0.04
COL25A1Q9BXS0 AC005786.2-201ENST00000592368 369 ntTSL 3 BASIC15.27■□□□□ 0.04
COL25A1Q9BXS0 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC15.27■□□□□ 0.04
COL25A1Q9BXS0 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL25A1Q9BXS0 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC15.27■□□□□ 0.03
COL25A1Q9BXS0 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL25A1Q9BXS0 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL25A1Q9BXS0 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC15.27■□□□□ 0.03
COL25A1Q9BXS0 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL25A1Q9BXS0 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC15.27■□□□□ 0.03
COL25A1Q9BXS0 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL25A1Q9BXS0 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL25A1Q9BXS0 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC15.27■□□□□ 0.03
COL25A1Q9BXS0 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
COL25A1Q9BXS0 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC15.27■□□□□ 0.03
COL25A1Q9BXS0 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC15.27■□□□□ 0.03
COL25A1Q9BXS0 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
COL25A1Q9BXS0 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL25A1Q9BXS0 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
COL25A1Q9BXS0 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 FCRL6-202ENST00000339348 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 AL645728.1-201ENST00000366221 2101 ntBASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 AC087289.5-201ENST00000586076 3175 ntBASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 FAM25A-201ENST00000343959 345 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 SFMBT2-202ENST00000379711 692 ntTSL 5 BASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 AC006328.1-201ENST00000437571 379 ntBASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 AL691482.3-201ENST00000504773 987 ntTSL 2 BASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 AC011431.1-201ENST00000512971 230 ntBASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 SMIM28-201ENST00000573100 855 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 LINC01029-202ENST00000578833 366 ntTSL 3 BASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 AC055811.4-201ENST00000624039 1754 ntBASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
COL25A1Q9BXS0 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms