Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NKX2-3Q8TAU0 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NKX2-3Q8TAU0 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC18.27■□□□□ 0.52
NKX2-3Q8TAU0 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC18.27■□□□□ 0.52
NKX2-3Q8TAU0 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC18.27■□□□□ 0.52
NKX2-3Q8TAU0 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC18.27■□□□□ 0.52
NKX2-3Q8TAU0 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC18.27■□□□□ 0.52
NKX2-3Q8TAU0 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC18.27■□□□□ 0.52
NKX2-3Q8TAU0 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC18.27■□□□□ 0.52
NKX2-3Q8TAU0 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
NKX2-3Q8TAU0 ABBA01031660.1-201ENST00000635219 756 ntBASIC18.27■□□□□ 0.52
NKX2-3Q8TAU0 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC18.27■□□□□ 0.52
NKX2-3Q8TAU0 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
NKX2-3Q8TAU0 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
NKX2-3Q8TAU0 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
NKX2-3Q8TAU0 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC18.27■□□□□ 0.51
NKX2-3Q8TAU0 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC18.27■□□□□ 0.51
NKX2-3Q8TAU0 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
NKX2-3Q8TAU0 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
NKX2-3Q8TAU0 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC18.27■□□□□ 0.51
NKX2-3Q8TAU0 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
NKX2-3Q8TAU0 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 APOA1-205ENST00000375329 927 ntTSL 2 BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 AL442647.2-201ENST00000429864 857 ntBASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 YBX1P6-201ENST00000442962 1002 ntBASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 PFN2-205ENST00000461868 613 ntTSL 2 BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 FOS-206ENST00000555347 1280 ntTSL 2 BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 TMBIM7P-203ENST00000641617 1718 ntBASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC18.26■□□□□ 0.51
NKX2-3Q8TAU0 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC18.25■□□□□ 0.51
NKX2-3Q8TAU0 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
NKX2-3Q8TAU0 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC18.25■□□□□ 0.51
NKX2-3Q8TAU0 ZEB1-AS1-208ENST00000607166 2503 ntBASIC18.25■□□□□ 0.51
NKX2-3Q8TAU0 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18.25■□□□□ 0.51
NKX2-3Q8TAU0 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
NKX2-3Q8TAU0 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC18.25■□□□□ 0.51
NKX2-3Q8TAU0 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NKX2-3Q8TAU0 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NKX2-3Q8TAU0 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NKX2-3Q8TAU0 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
NKX2-3Q8TAU0 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
NKX2-3Q8TAU0 USB1-202ENST00000423271 1217 ntTSL 2 BASIC18.25■□□□□ 0.51
NKX2-3Q8TAU0 AC007551.1-201ENST00000457394 519 ntBASIC18.25■□□□□ 0.51
NKX2-3Q8TAU0 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC18.25■□□□□ 0.51
NKX2-3Q8TAU0 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC18.25■□□□□ 0.51
NKX2-3Q8TAU0 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC18.25■□□□□ 0.51
NKX2-3Q8TAU0 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC18.25■□□□□ 0.51
NKX2-3Q8TAU0 AC079316.1-201ENST00000548397 411 ntBASIC18.25■□□□□ 0.51
NKX2-3Q8TAU0 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC18.25■□□□□ 0.51
NKX2-3Q8TAU0 AC133539.2-201ENST00000604757 467 ntBASIC18.25■□□□□ 0.51
NKX2-3Q8TAU0 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NKX2-3Q8TAU0 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NKX2-3Q8TAU0 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC18.25■□□□□ 0.51
NKX2-3Q8TAU0 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
NKX2-3Q8TAU0 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC18.25■□□□□ 0.51
NKX2-3Q8TAU0 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NKX2-3Q8TAU0 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NKX2-3Q8TAU0 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
NKX2-3Q8TAU0 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC18.25■□□□□ 0.51
NKX2-3Q8TAU0 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
NKX2-3Q8TAU0 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NKX2-3Q8TAU0 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
NKX2-3Q8TAU0 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms