Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMC1BQ8NDV3 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMC1BQ8NDV3 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SMC1BQ8NDV3 GHSR-202ENST00000427970 912 ntBASIC18.25■□□□□ 0.51
SMC1BQ8NDV3 AC130709.1-201ENST00000484779 1212 ntBASIC18.25■□□□□ 0.51
SMC1BQ8NDV3 RCC2P8-201ENST00000502779 1035 ntBASIC18.25■□□□□ 0.51
SMC1BQ8NDV3 FAM86KP-201ENST00000509817 987 ntBASIC18.25■□□□□ 0.51
SMC1BQ8NDV3 ALG1L6P-201ENST00000515248 758 ntBASIC18.25■□□□□ 0.51
SMC1BQ8NDV3 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
SMC1BQ8NDV3 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC18.25■□□□□ 0.51
SMC1BQ8NDV3 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SMC1BQ8NDV3 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
SMC1BQ8NDV3 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC18.25■□□□□ 0.51
SMC1BQ8NDV3 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMC1BQ8NDV3 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SMC1BQ8NDV3 AP001282.1-201ENST00000531301 1499 ntBASIC18.25■□□□□ 0.51
SMC1BQ8NDV3 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMC1BQ8NDV3 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SMC1BQ8NDV3 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
SMC1BQ8NDV3 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 DDX39AP1-201ENST00000445147 1181 ntBASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 AL132994.2-201ENST00000603120 687 ntBASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SMC1BQ8NDV3 AL592424.1-201ENST00000563624 1536 ntBASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 RN7SL258P-201ENST00000478664 300 ntBASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 AC106820.3-201ENST00000561653 397 ntBASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 AL118516.1-201ENST00000564152 670 ntBASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 SNORD3B-2-202ENST00000571722 791 ntBASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 AC007718.1-201ENST00000621078 280 ntBASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 AL162426.1-201ENST00000624141 743 ntBASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 NF2-208ENST00000403435 2568 ntTSL 5 BASIC18.23■□□□□ 0.51
SMC1BQ8NDV3 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms