Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
DEPDC4Q8N2C3 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 AC140658.5-201ENST00000438532 169 ntBASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 GATB-205ENST00000508611 605 ntTSL 2 BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 AP000344.2-201ENST00000512987 629 ntBASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 RPL28-209ENST00000560055 670 ntTSL 3 BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 AP002472.1-201ENST00000577490 586 ntBASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 RN7SL275P-201ENST00000582762 335 ntBASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 MIR4321-201ENST00000592276 80 ntBASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 AC004835.2-201ENST00000603762 682 ntBASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 LINC02084-201ENST00000606069 1096 ntBASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 AL355385.1-201ENST00000606123 409 ntBASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 TKT-202ENST00000423516 2075 ntTSL 2 BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC14.59□□□□□ -0.07
DEPDC4Q8N2C3 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
DEPDC4Q8N2C3 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
DEPDC4Q8N2C3 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
DEPDC4Q8N2C3 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
DEPDC4Q8N2C3 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.07
DEPDC4Q8N2C3 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
DEPDC4Q8N2C3 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
DEPDC4Q8N2C3 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC14.58□□□□□ -0.07
DEPDC4Q8N2C3 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.07
DEPDC4Q8N2C3 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
DEPDC4Q8N2C3 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
DEPDC4Q8N2C3 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
DEPDC4Q8N2C3 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
DEPDC4Q8N2C3 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
DEPDC4Q8N2C3 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
DEPDC4Q8N2C3 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
DEPDC4Q8N2C3 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
DEPDC4Q8N2C3 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
DEPDC4Q8N2C3 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
DEPDC4Q8N2C3 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC14.58□□□□□ -0.08
DEPDC4Q8N2C3 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC14.58□□□□□ -0.08
DEPDC4Q8N2C3 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC14.58□□□□□ -0.08
DEPDC4Q8N2C3 PUS1-205ENST00000535067 838 ntTSL 3 BASIC14.58□□□□□ -0.08
DEPDC4Q8N2C3 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
DEPDC4Q8N2C3 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
DEPDC4Q8N2C3 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC14.58□□□□□ -0.08
DEPDC4Q8N2C3 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC14.58□□□□□ -0.08
DEPDC4Q8N2C3 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC14.58□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms