Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 AC138932.1-201ENST00000534164 6830 ntBASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
KRT28Q7Z3Y7 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 AC080080.1-201ENST00000625121 2420 ntBASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 SHC1P1-201ENST00000425230 1745 ntBASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 RPL13AP19-201ENST00000434320 584 ntBASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 HLA-J-204ENST00000495278 958 ntBASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 RCC2P8-201ENST00000502779 1035 ntBASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 AC009779.1-201ENST00000551138 283 ntBASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 NAP1L6-202ENST00000641404 1222 ntBASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC20.65■□□□□ 0.9
KRT28Q7Z3Y7 INE2-201ENST00000630399 1874 ntBASIC20.64■□□□□ 0.9
KRT28Q7Z3Y7 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
KRT28Q7Z3Y7 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
KRT28Q7Z3Y7 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC20.64■□□□□ 0.9
KRT28Q7Z3Y7 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
KRT28Q7Z3Y7 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
KRT28Q7Z3Y7 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
KRT28Q7Z3Y7 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
KRT28Q7Z3Y7 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC20.64■□□□□ 0.89
KRT28Q7Z3Y7 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
KRT28Q7Z3Y7 AK6-201ENST00000380818 1183 ntTSL 2 BASIC20.64■□□□□ 0.89
KRT28Q7Z3Y7 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
KRT28Q7Z3Y7 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
KRT28Q7Z3Y7 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
KRT28Q7Z3Y7 VDAC1P1-201ENST00000439229 848 ntBASIC20.64■□□□□ 0.89
KRT28Q7Z3Y7 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC20.64■□□□□ 0.89
KRT28Q7Z3Y7 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC20.64■□□□□ 0.89
KRT28Q7Z3Y7 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC20.64■□□□□ 0.89
KRT28Q7Z3Y7 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
KRT28Q7Z3Y7 IRF3-215ENST00000596822 823 ntTSL 3 BASIC20.64■□□□□ 0.89
KRT28Q7Z3Y7 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC20.64■□□□□ 0.89
KRT28Q7Z3Y7 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
KRT28Q7Z3Y7 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
KRT28Q7Z3Y7 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
KRT28Q7Z3Y7 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC20.64■□□□□ 0.89
KRT28Q7Z3Y7 AC090340.1-201ENST00000620778 4980 ntBASIC20.64■□□□□ 0.89
KRT28Q7Z3Y7 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 AC009093.2-202ENST00000620513 2079 ntBASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 TBC1D3J-201ENST00000620719 1426 ntBASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 AC078991.1-201ENST00000437297 610 ntBASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
KRT28Q7Z3Y7 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms