Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC16.77■□□□□ 0.28
KRT39Q6A163 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
KRT39Q6A163 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
KRT39Q6A163 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
KRT39Q6A163 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.28
KRT39Q6A163 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
KRT39Q6A163 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.28
KRT39Q6A163 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
KRT39Q6A163 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
KRT39Q6A163 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
KRT39Q6A163 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC16.77■□□□□ 0.28
KRT39Q6A163 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
KRT39Q6A163 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
KRT39Q6A163 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
KRT39Q6A163 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
KRT39Q6A163 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
KRT39Q6A163 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
KRT39Q6A163 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC16.77■□□□□ 0.28
KRT39Q6A163 SPTLC1P1-201ENST00000447199 261 ntBASIC16.77■□□□□ 0.28
KRT39Q6A163 TSPY16P-201ENST00000449843 468 ntBASIC16.77■□□□□ 0.28
KRT39Q6A163 AC093004.1-201ENST00000508850 424 ntBASIC16.77■□□□□ 0.28
KRT39Q6A163 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC16.77■□□□□ 0.28
KRT39Q6A163 SPCS2P1-201ENST00000561636 679 ntBASIC16.77■□□□□ 0.28
KRT39Q6A163 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
KRT39Q6A163 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
KRT39Q6A163 GPX4-206ENST00000588919 803 ntTSL 2 BASIC16.77■□□□□ 0.28
KRT39Q6A163 AC011467.4-201ENST00000594891 528 ntBASIC16.77■□□□□ 0.28
KRT39Q6A163 AL096865.1-201ENST00000606796 927 ntBASIC16.77■□□□□ 0.28
KRT39Q6A163 GPR39-203ENST00000622084 900 ntTSL 5 BASIC16.77■□□□□ 0.28
KRT39Q6A163 HFE2-206ENST00000634927 506 ntTSL 4 BASIC16.77■□□□□ 0.28
KRT39Q6A163 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC16.77■□□□□ 0.28
KRT39Q6A163 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
KRT39Q6A163 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
KRT39Q6A163 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.77■□□□□ 0.27
KRT39Q6A163 AC091951.1-201ENST00000512854 2465 ntBASIC16.77■□□□□ 0.27
KRT39Q6A163 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
KRT39Q6A163 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC16.77■□□□□ 0.27
KRT39Q6A163 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
KRT39Q6A163 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
KRT39Q6A163 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
KRT39Q6A163 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC16.77■□□□□ 0.27
KRT39Q6A163 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
KRT39Q6A163 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
KRT39Q6A163 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
KRT39Q6A163 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
KRT39Q6A163 AC006058.4-201ENST00000624016 1670 ntBASIC16.76■□□□□ 0.27
KRT39Q6A163 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC16.76■□□□□ 0.27
KRT39Q6A163 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
KRT39Q6A163 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
KRT39Q6A163 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
KRT39Q6A163 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
KRT39Q6A163 PARN-202ENST00000420015 2360 ntTSL 2 BASIC16.76■□□□□ 0.27
KRT39Q6A163 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
KRT39Q6A163 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
KRT39Q6A163 OSM-203ENST00000403463 464 ntTSL 3 BASIC16.76■□□□□ 0.27
KRT39Q6A163 GHSR-202ENST00000427970 912 ntBASIC16.76■□□□□ 0.27
KRT39Q6A163 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC16.76■□□□□ 0.27
KRT39Q6A163 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC16.76■□□□□ 0.27
KRT39Q6A163 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC16.76■□□□□ 0.27
KRT39Q6A163 BCRP1-201ENST00000444246 691 ntBASIC16.76■□□□□ 0.27
KRT39Q6A163 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC16.76■□□□□ 0.27
KRT39Q6A163 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC16.76■□□□□ 0.27
KRT39Q6A163 RRP7BP-205ENST00000566851 833 ntBASIC16.76■□□□□ 0.27
KRT39Q6A163 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC16.76■□□□□ 0.27
KRT39Q6A163 AL355385.1-201ENST00000606123 409 ntBASIC16.76■□□□□ 0.27
KRT39Q6A163 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC16.76■□□□□ 0.27
KRT39Q6A163 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
KRT39Q6A163 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
KRT39Q6A163 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
KRT39Q6A163 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
KRT39Q6A163 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
KRT39Q6A163 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC16.76■□□□□ 0.27
KRT39Q6A163 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
KRT39Q6A163 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
KRT39Q6A163 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
KRT39Q6A163 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
KRT39Q6A163 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
KRT39Q6A163 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
KRT39Q6A163 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
KRT39Q6A163 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
KRT39Q6A163 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
KRT39Q6A163 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
KRT39Q6A163 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC16.75■□□□□ 0.27
KRT39Q6A163 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC16.75■□□□□ 0.27
KRT39Q6A163 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
KRT39Q6A163 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
KRT39Q6A163 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC16.75■□□□□ 0.27
KRT39Q6A163 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC16.75■□□□□ 0.27
KRT39Q6A163 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
KRT39Q6A163 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC16.75■□□□□ 0.27
KRT39Q6A163 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
KRT39Q6A163 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC16.75■□□□□ 0.27
KRT39Q6A163 AC067930.6-201ENST00000623257 4947 ntBASIC16.75■□□□□ 0.27
KRT39Q6A163 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC16.75■□□□□ 0.27
KRT39Q6A163 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
KRT39Q6A163 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC16.75■□□□□ 0.27
KRT39Q6A163 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
KRT39Q6A163 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
KRT39Q6A163 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC16.75■□□□□ 0.27
KRT39Q6A163 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms