Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
VPS53Q5VIR6 C18orf15-201ENST00000623680 2534 ntBASIC18.78■□□□□ 0.6
VPS53Q5VIR6 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS53Q5VIR6 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
VPS53Q5VIR6 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VPS53Q5VIR6 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS53Q5VIR6 STK33-217ENST00000534493 1895 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS53Q5VIR6 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS53Q5VIR6 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC18.77■□□□□ 0.6
VPS53Q5VIR6 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS53Q5VIR6 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VPS53Q5VIR6 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS53Q5VIR6 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS53Q5VIR6 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
VPS53Q5VIR6 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
VPS53Q5VIR6 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VPS53Q5VIR6 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC18.77■□□□□ 0.6
VPS53Q5VIR6 CALY-203ENST00000368558 825 ntTSL 5 BASIC18.77■□□□□ 0.6
VPS53Q5VIR6 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
VPS53Q5VIR6 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS53Q5VIR6 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
VPS53Q5VIR6 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS53Q5VIR6 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS53Q5VIR6 TIMM17BP1-201ENST00000545713 516 ntBASIC18.77■□□□□ 0.6
VPS53Q5VIR6 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC18.77■□□□□ 0.6
VPS53Q5VIR6 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC18.77■□□□□ 0.6
VPS53Q5VIR6 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS53Q5VIR6 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS53Q5VIR6 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS53Q5VIR6 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS53Q5VIR6 AC067930.6-201ENST00000623257 4947 ntBASIC18.77■□□□□ 0.6
VPS53Q5VIR6 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
VPS53Q5VIR6 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC18.77■□□□□ 0.59
VPS53Q5VIR6 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.59
VPS53Q5VIR6 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
VPS53Q5VIR6 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
VPS53Q5VIR6 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
VPS53Q5VIR6 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VPS53Q5VIR6 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS53Q5VIR6 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
VPS53Q5VIR6 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS53Q5VIR6 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS53Q5VIR6 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS53Q5VIR6 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS53Q5VIR6 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
VPS53Q5VIR6 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
VPS53Q5VIR6 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS53Q5VIR6 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VPS53Q5VIR6 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
VPS53Q5VIR6 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC18.76■□□□□ 0.59
VPS53Q5VIR6 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
VPS53Q5VIR6 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS53Q5VIR6 AL121723.1-201ENST00000445194 1519 ntBASIC18.76■□□□□ 0.59
VPS53Q5VIR6 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS53Q5VIR6 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS53Q5VIR6 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS53Q5VIR6 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS53Q5VIR6 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS53Q5VIR6 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC18.76■□□□□ 0.59
VPS53Q5VIR6 CD81-207ENST00000481687 890 ntTSL 2 BASIC18.76■□□□□ 0.59
VPS53Q5VIR6 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC18.76■□□□□ 0.59
VPS53Q5VIR6 TPRX2P-201ENST00000535362 881 ntBASIC18.76■□□□□ 0.59
VPS53Q5VIR6 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC18.76■□□□□ 0.59
VPS53Q5VIR6 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
VPS53Q5VIR6 MIR8072-201ENST00000614241 80 ntBASIC18.76■□□□□ 0.59
VPS53Q5VIR6 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC18.76■□□□□ 0.59
VPS53Q5VIR6 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
VPS53Q5VIR6 AL513477.1-201ENST00000602865 2407 ntBASIC18.76■□□□□ 0.59
VPS53Q5VIR6 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS53Q5VIR6 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
VPS53Q5VIR6 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC18.76■□□□□ 0.59
VPS53Q5VIR6 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS53Q5VIR6 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS53Q5VIR6 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS53Q5VIR6 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VPS53Q5VIR6 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
VPS53Q5VIR6 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS53Q5VIR6 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
VPS53Q5VIR6 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS53Q5VIR6 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS53Q5VIR6 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
VPS53Q5VIR6 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VPS53Q5VIR6 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS53Q5VIR6 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS53Q5VIR6 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC18.75■□□□□ 0.59
VPS53Q5VIR6 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS53Q5VIR6 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC18.75■□□□□ 0.59
VPS53Q5VIR6 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
VPS53Q5VIR6 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VPS53Q5VIR6 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS53Q5VIR6 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC18.75■□□□□ 0.59
VPS53Q5VIR6 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC18.75■□□□□ 0.59
VPS53Q5VIR6 GREM1-201ENST00000560677 623 ntTSL 4 BASIC18.75■□□□□ 0.59
VPS53Q5VIR6 AC138761.1-201ENST00000584393 385 ntBASIC18.75■□□□□ 0.59
VPS53Q5VIR6 AL132655.2-201ENST00000596276 594 ntBASIC18.75■□□□□ 0.59
VPS53Q5VIR6 CHCHD2P3-201ENST00000603038 451 ntBASIC18.75■□□□□ 0.59
VPS53Q5VIR6 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC18.75■□□□□ 0.59
VPS53Q5VIR6 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS53Q5VIR6 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS53Q5VIR6 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms