Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
USP39Q53GS9 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC15.81■□□□□ 0.12
USP39Q53GS9 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC15.81■□□□□ 0.12
USP39Q53GS9 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC15.81■□□□□ 0.12
USP39Q53GS9 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
USP39Q53GS9 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
USP39Q53GS9 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
USP39Q53GS9 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
USP39Q53GS9 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
USP39Q53GS9 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
USP39Q53GS9 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC15.81■□□□□ 0.12
USP39Q53GS9 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
USP39Q53GS9 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
USP39Q53GS9 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
USP39Q53GS9 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
USP39Q53GS9 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
USP39Q53GS9 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
USP39Q53GS9 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
USP39Q53GS9 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC15.81■□□□□ 0.12
USP39Q53GS9 VDAC1P7-201ENST00000462417 847 ntBASIC15.81■□□□□ 0.12
USP39Q53GS9 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
USP39Q53GS9 AC099548.2-209ENST00000480264 625 ntBASIC15.81■□□□□ 0.12
USP39Q53GS9 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
USP39Q53GS9 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
USP39Q53GS9 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
USP39Q53GS9 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC15.81■□□□□ 0.12
USP39Q53GS9 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC15.81■□□□□ 0.12
USP39Q53GS9 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC15.81■□□□□ 0.12
USP39Q53GS9 DERL2-202ENST00000570848 657 ntTSL 5 BASIC15.81■□□□□ 0.12
USP39Q53GS9 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
USP39Q53GS9 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
USP39Q53GS9 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
USP39Q53GS9 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
USP39Q53GS9 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
USP39Q53GS9 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
USP39Q53GS9 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
USP39Q53GS9 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
USP39Q53GS9 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
USP39Q53GS9 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
USP39Q53GS9 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
USP39Q53GS9 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
USP39Q53GS9 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
USP39Q53GS9 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC15.8■□□□□ 0.12
USP39Q53GS9 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
USP39Q53GS9 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
USP39Q53GS9 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
USP39Q53GS9 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC15.8■□□□□ 0.12
USP39Q53GS9 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
USP39Q53GS9 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
USP39Q53GS9 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC15.8■□□□□ 0.12
USP39Q53GS9 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
USP39Q53GS9 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC15.8■□□□□ 0.12
USP39Q53GS9 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
USP39Q53GS9 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
USP39Q53GS9 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
USP39Q53GS9 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
USP39Q53GS9 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
USP39Q53GS9 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
USP39Q53GS9 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
USP39Q53GS9 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
USP39Q53GS9 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
USP39Q53GS9 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC15.8■□□□□ 0.12
USP39Q53GS9 C2orf27AP3-201ENST00000434123 579 ntBASIC15.8■□□□□ 0.12
USP39Q53GS9 AC093433.1-201ENST00000458048 571 ntBASIC15.8■□□□□ 0.12
USP39Q53GS9 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC15.8■□□□□ 0.12
USP39Q53GS9 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC15.8■□□□□ 0.12
USP39Q53GS9 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
USP39Q53GS9 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC15.8■□□□□ 0.12
USP39Q53GS9 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC15.8■□□□□ 0.12
USP39Q53GS9 CLUHP6-201ENST00000580789 941 ntBASIC15.8■□□□□ 0.12
USP39Q53GS9 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC15.8■□□□□ 0.12
USP39Q53GS9 AC243960.2-201ENST00000600996 747 ntBASIC15.8■□□□□ 0.12
USP39Q53GS9 AL354718.3-201ENST00000616414 581 ntBASIC15.8■□□□□ 0.12
USP39Q53GS9 CR382287.1-201ENST00000623954 586 ntBASIC15.8■□□□□ 0.12
USP39Q53GS9 RHOXF1P1-202ENST00000635473 501 ntBASIC15.8■□□□□ 0.12
USP39Q53GS9 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC15.8■□□□□ 0.12
USP39Q53GS9 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
USP39Q53GS9 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
USP39Q53GS9 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
USP39Q53GS9 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
USP39Q53GS9 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
USP39Q53GS9 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
USP39Q53GS9 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
USP39Q53GS9 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC15.8■□□□□ 0.12
USP39Q53GS9 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
USP39Q53GS9 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
USP39Q53GS9 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
USP39Q53GS9 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC15.8■□□□□ 0.12
USP39Q53GS9 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
USP39Q53GS9 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
USP39Q53GS9 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
USP39Q53GS9 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
USP39Q53GS9 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
USP39Q53GS9 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
USP39Q53GS9 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
USP39Q53GS9 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
USP39Q53GS9 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
USP39Q53GS9 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
USP39Q53GS9 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC15.79■□□□□ 0.12
USP39Q53GS9 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms