Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SOX3P41225 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC14.7□□□□□ -0.06
SOX3P41225 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC14.7□□□□□ -0.06
SOX3P41225 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
SOX3P41225 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
SOX3P41225 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SOX3P41225 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
SOX3P41225 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC14.7□□□□□ -0.06
SOX3P41225 RER1-203ENST00000378513 3000 ntTSL 3 BASIC14.7□□□□□ -0.06
SOX3P41225 AC023908.3-201ENST00000564211 3047 ntBASIC14.7□□□□□ -0.06
SOX3P41225 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SOX3P41225 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
SOX3P41225 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SOX3P41225 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SOX3P41225 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SOX3P41225 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
SOX3P41225 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
SOX3P41225 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC14.69□□□□□ -0.06
SOX3P41225 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SOX3P41225 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SOX3P41225 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SOX3P41225 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
SOX3P41225 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
SOX3P41225 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SOX3P41225 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC14.69□□□□□ -0.06
SOX3P41225 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC14.69□□□□□ -0.06
SOX3P41225 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
SOX3P41225 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC14.69□□□□□ -0.06
SOX3P41225 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SOX3P41225 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SOX3P41225 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC14.69□□□□□ -0.06
SOX3P41225 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SOX3P41225 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
SOX3P41225 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SOX3P41225 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SOX3P41225 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SOX3P41225 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SOX3P41225 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC14.69□□□□□ -0.06
SOX3P41225 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC14.69□□□□□ -0.06
SOX3P41225 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SOX3P41225 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SOX3P41225 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
SOX3P41225 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SOX3P41225 AC114501.2-201ENST00000439631 535 ntBASIC14.69□□□□□ -0.06
SOX3P41225 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC14.69□□□□□ -0.06
SOX3P41225 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC14.69□□□□□ -0.06
SOX3P41225 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC14.69□□□□□ -0.06
SOX3P41225 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SOX3P41225 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SOX3P41225 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
SOX3P41225 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
SOX3P41225 AC025048.3-201ENST00000590609 569 ntBASIC14.69□□□□□ -0.06
SOX3P41225 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SOX3P41225 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
SOX3P41225 AC005702.4-201ENST00000618393 416 ntBASIC14.69□□□□□ -0.06
SOX3P41225 AC004461.2-201ENST00000629517 803 ntBASIC14.69□□□□□ -0.06
SOX3P41225 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SOX3P41225 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
SOX3P41225 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
SOX3P41225 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SOX3P41225 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC14.69□□□□□ -0.06
SOX3P41225 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC14.69□□□□□ -0.06
SOX3P41225 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
SOX3P41225 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SOX3P41225 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SOX3P41225 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SOX3P41225 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SOX3P41225 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SOX3P41225 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC14.69□□□□□ -0.06
SOX3P41225 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
SOX3P41225 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SOX3P41225 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC14.69□□□□□ -0.06
SOX3P41225 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SOX3P41225 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
SOX3P41225 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SOX3P41225 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC14.68□□□□□ -0.06
SOX3P41225 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SOX3P41225 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
SOX3P41225 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SOX3P41225 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
SOX3P41225 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SOX3P41225 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC14.68□□□□□ -0.06
SOX3P41225 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SOX3P41225 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SOX3P41225 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SOX3P41225 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SOX3P41225 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC14.68□□□□□ -0.06
SOX3P41225 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC14.68□□□□□ -0.06
SOX3P41225 RASL12-203ENST00000434605 982 ntTSL 2 BASIC14.68□□□□□ -0.06
SOX3P41225 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC14.68□□□□□ -0.06
SOX3P41225 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC14.68□□□□□ -0.06
SOX3P41225 GNAQP1-201ENST00000444815 1067 ntBASIC14.68□□□□□ -0.06
SOX3P41225 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC14.68□□□□□ -0.06
SOX3P41225 COX20P2-201ENST00000452636 358 ntBASIC14.68□□□□□ -0.06
SOX3P41225 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC14.68□□□□□ -0.06
SOX3P41225 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC14.68□□□□□ -0.06
SOX3P41225 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC14.68□□□□□ -0.06
SOX3P41225 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SOX3P41225 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SOX3P41225 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC14.68□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms