Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC15.52■□□□□ 0.08
MSH3P20585 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC15.52■□□□□ 0.08
MSH3P20585 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC15.52■□□□□ 0.08
MSH3P20585 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
MSH3P20585 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
MSH3P20585 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
MSH3P20585 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
MSH3P20585 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
MSH3P20585 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC15.52■□□□□ 0.07
MSH3P20585 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
MSH3P20585 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
MSH3P20585 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
MSH3P20585 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
MSH3P20585 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC15.51■□□□□ 0.07
MSH3P20585 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
MSH3P20585 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
MSH3P20585 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
MSH3P20585 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC15.51■□□□□ 0.07
MSH3P20585 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
MSH3P20585 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
MSH3P20585 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC15.51■□□□□ 0.07
MSH3P20585 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
MSH3P20585 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
MSH3P20585 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
MSH3P20585 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC15.51■□□□□ 0.07
MSH3P20585 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
MSH3P20585 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
MSH3P20585 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
MSH3P20585 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
MSH3P20585 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC15.51■□□□□ 0.07
MSH3P20585 MEP1AP4-201ENST00000423244 1087 ntBASIC15.51■□□□□ 0.07
MSH3P20585 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC15.51■□□□□ 0.07
MSH3P20585 SPTLC1P1-201ENST00000447199 261 ntBASIC15.51■□□□□ 0.07
MSH3P20585 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC15.51■□□□□ 0.07
MSH3P20585 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
MSH3P20585 GREM1-201ENST00000560677 623 ntTSL 4 BASIC15.51■□□□□ 0.07
MSH3P20585 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
MSH3P20585 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
MSH3P20585 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
MSH3P20585 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
MSH3P20585 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
MSH3P20585 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
MSH3P20585 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
MSH3P20585 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
MSH3P20585 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC15.51■□□□□ 0.07
MSH3P20585 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
MSH3P20585 AC007326.2-201ENST00000624224 7579 ntBASIC15.51■□□□□ 0.07
MSH3P20585 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
MSH3P20585 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
MSH3P20585 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
MSH3P20585 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
MSH3P20585 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC15.5■□□□□ 0.07
MSH3P20585 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC15.5■□□□□ 0.07
MSH3P20585 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
MSH3P20585 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
MSH3P20585 RERG-209ENST00000546331 1383 ntTSL 2 BASIC15.5■□□□□ 0.07
MSH3P20585 AC087481.3-201ENST00000602886 1894 ntBASIC15.5■□□□□ 0.07
MSH3P20585 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC15.5■□□□□ 0.07
MSH3P20585 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC15.5■□□□□ 0.07
MSH3P20585 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC15.5■□□□□ 0.07
MSH3P20585 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
MSH3P20585 AC023157.3-201ENST00000619086 2088 ntBASIC15.5■□□□□ 0.07
MSH3P20585 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC15.5■□□□□ 0.07
MSH3P20585 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
MSH3P20585 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
MSH3P20585 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
MSH3P20585 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
MSH3P20585 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC15.5■□□□□ 0.07
MSH3P20585 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
MSH3P20585 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
MSH3P20585 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
MSH3P20585 MIR661-201ENST00000384842 89 ntBASIC15.5■□□□□ 0.07
MSH3P20585 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC15.5■□□□□ 0.07
MSH3P20585 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC15.5■□□□□ 0.07
MSH3P20585 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC15.5■□□□□ 0.07
MSH3P20585 KRT18P43-201ENST00000469825 1281 ntBASIC15.5■□□□□ 0.07
MSH3P20585 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
MSH3P20585 TERF1P3-201ENST00000505638 1227 ntBASIC15.5■□□□□ 0.07
MSH3P20585 AC093004.1-201ENST00000508850 424 ntBASIC15.5■□□□□ 0.07
MSH3P20585 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC15.5■□□□□ 0.07
MSH3P20585 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC15.5■□□□□ 0.07
MSH3P20585 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC15.5■□□□□ 0.07
MSH3P20585 HADH-212ENST00000638621 741 ntTSL 5 BASIC15.5■□□□□ 0.07
MSH3P20585 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
MSH3P20585 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
MSH3P20585 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC15.5■□□□□ 0.07
MSH3P20585 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
MSH3P20585 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
MSH3P20585 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
MSH3P20585 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
MSH3P20585 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
MSH3P20585 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
MSH3P20585 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
MSH3P20585 TK1-203ENST00000588734 1681 ntTSL 2 BASIC15.5■□□□□ 0.07
MSH3P20585 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
MSH3P20585 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
MSH3P20585 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
MSH3P20585 AC105250.1-201ENST00000509378 2057 ntBASIC15.5■□□□□ 0.07
MSH3P20585 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
MSH3P20585 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms