Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 HMGA1P7-201ENST00000406908 502 ntBASIC15.71■□□□□ 0.11
VIMP08670 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.11
VIMP08670 FAM86EP-206ENST00000510506 987 ntBASIC15.71■□□□□ 0.11
VIMP08670 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC15.71■□□□□ 0.11
VIMP08670 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC15.71■□□□□ 0.11
VIMP08670 MIR3909-201ENST00000579518 119 ntBASIC15.71■□□□□ 0.11
VIMP08670 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC15.71■□□□□ 0.11
VIMP08670 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VIMP08670 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC15.71■□□□□ 0.11
VIMP08670 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC15.71■□□□□ 0.11
VIMP08670 AP000550.4-202ENST00000639755 178 ntBASIC15.71■□□□□ 0.11
VIMP08670 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC15.71■□□□□ 0.11
VIMP08670 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC15.71■□□□□ 0.11
VIMP08670 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
VIMP08670 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
VIMP08670 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
VIMP08670 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VIMP08670 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
VIMP08670 ACE3P-201ENST00000423435 1973 ntBASIC15.71■□□□□ 0.1
VIMP08670 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
VIMP08670 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
VIMP08670 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
VIMP08670 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.1
VIMP08670 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
VIMP08670 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC15.7■□□□□ 0.1
VIMP08670 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VIMP08670 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VIMP08670 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
VIMP08670 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VIMP08670 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VIMP08670 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
VIMP08670 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
VIMP08670 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VIMP08670 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
VIMP08670 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
VIMP08670 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
VIMP08670 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC15.7■□□□□ 0.1
VIMP08670 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC15.7■□□□□ 0.1
VIMP08670 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VIMP08670 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
VIMP08670 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
VIMP08670 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VIMP08670 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VIMP08670 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
VIMP08670 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
VIMP08670 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
VIMP08670 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC15.7■□□□□ 0.1
VIMP08670 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC15.7■□□□□ 0.1
VIMP08670 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC15.7■□□□□ 0.1
VIMP08670 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
VIMP08670 FAM210CP-201ENST00000445714 574 ntBASIC15.7■□□□□ 0.1
VIMP08670 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC15.7■□□□□ 0.1
VIMP08670 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC15.7■□□□□ 0.1
VIMP08670 QPRT-203ENST00000562473 579 ntTSL 3 BASIC15.7■□□□□ 0.1
VIMP08670 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC15.7■□□□□ 0.1
VIMP08670 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC15.7■□□□□ 0.1
VIMP08670 ARL16-209ENST00000573715 763 ntTSL 3 BASIC15.7■□□□□ 0.1
VIMP08670 ARL16-211ENST00000576135 694 ntTSL 3 BASIC15.7■□□□□ 0.1
VIMP08670 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC15.7■□□□□ 0.1
VIMP08670 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC15.7■□□□□ 0.1
VIMP08670 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
VIMP08670 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC15.7■□□□□ 0.1
VIMP08670 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VIMP08670 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
VIMP08670 REXO1L2P-201ENST00000425429 2069 ntBASIC15.7■□□□□ 0.1
VIMP08670 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
VIMP08670 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
VIMP08670 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VIMP08670 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
VIMP08670 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VIMP08670 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC15.7■□□□□ 0.1
VIMP08670 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
VIMP08670 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
VIMP08670 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
VIMP08670 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC15.7■□□□□ 0.1
VIMP08670 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
VIMP08670 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
VIMP08670 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VIMP08670 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VIMP08670 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC15.69■□□□□ 0.1
VIMP08670 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
VIMP08670 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VIMP08670 ZBTB45P2-201ENST00000452245 1531 ntBASIC15.69■□□□□ 0.1
VIMP08670 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VIMP08670 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VIMP08670 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC15.69■□□□□ 0.1
VIMP08670 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
VIMP08670 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
VIMP08670 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
VIMP08670 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VIMP08670 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
VIMP08670 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC15.69■□□□□ 0.1
VIMP08670 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VIMP08670 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC15.69■□□□□ 0.1
VIMP08670 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC15.69■□□□□ 0.1
VIMP08670 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
VIMP08670 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
VIMP08670 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
VIMP08670 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC15.69■□□□□ 0.1
VIMP08670 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 66.4 ms