Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
CTDNEP1O95476 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC17.93■□□□□ 0.46
CTDNEP1O95476 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
CTDNEP1O95476 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC17.93■□□□□ 0.46
CTDNEP1O95476 NAA60-208ENST00000570819 833 ntTSL 2 BASIC17.93■□□□□ 0.46
CTDNEP1O95476 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CTDNEP1O95476 AC027796.2-201ENST00000575326 344 ntBASIC17.93■□□□□ 0.46
CTDNEP1O95476 MIR8072-201ENST00000614241 80 ntBASIC17.93■□□□□ 0.46
CTDNEP1O95476 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC17.93■□□□□ 0.46
CTDNEP1O95476 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC17.93■□□□□ 0.46
CTDNEP1O95476 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CTDNEP1O95476 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC17.93■□□□□ 0.46
CTDNEP1O95476 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CTDNEP1O95476 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CTDNEP1O95476 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CTDNEP1O95476 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
CTDNEP1O95476 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
CTDNEP1O95476 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CTDNEP1O95476 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CTDNEP1O95476 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
CTDNEP1O95476 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CTDNEP1O95476 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CTDNEP1O95476 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC17.93■□□□□ 0.46
CTDNEP1O95476 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CTDNEP1O95476 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC17.93■□□□□ 0.46
CTDNEP1O95476 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CTDNEP1O95476 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC17.92■□□□□ 0.46
CTDNEP1O95476 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
CTDNEP1O95476 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CTDNEP1O95476 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC17.92■□□□□ 0.46
CTDNEP1O95476 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CTDNEP1O95476 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CTDNEP1O95476 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
CTDNEP1O95476 SPDYE19P-201ENST00000338590 713 ntBASIC17.92■□□□□ 0.46
CTDNEP1O95476 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CTDNEP1O95476 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CTDNEP1O95476 MIR661-201ENST00000384842 89 ntBASIC17.92■□□□□ 0.46
CTDNEP1O95476 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC17.92■□□□□ 0.46
CTDNEP1O95476 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC17.92■□□□□ 0.46
CTDNEP1O95476 AL512638.1-201ENST00000457493 794 ntBASIC17.92■□□□□ 0.46
CTDNEP1O95476 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC17.92■□□□□ 0.46
CTDNEP1O95476 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC17.92■□□□□ 0.46
CTDNEP1O95476 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC17.92■□□□□ 0.46
CTDNEP1O95476 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CTDNEP1O95476 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC17.92■□□□□ 0.46
CTDNEP1O95476 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CTDNEP1O95476 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CTDNEP1O95476 AC012508.2-201ENST00000567613 1472 ntBASIC17.92■□□□□ 0.46
CTDNEP1O95476 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CTDNEP1O95476 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CTDNEP1O95476 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CTDNEP1O95476 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CTDNEP1O95476 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC17.92■□□□□ 0.46
CTDNEP1O95476 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CTDNEP1O95476 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CTDNEP1O95476 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
CTDNEP1O95476 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC17.92■□□□□ 0.46
CTDNEP1O95476 CICP14-201ENST00000629111 2732 ntBASIC17.92■□□□□ 0.46
CTDNEP1O95476 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CTDNEP1O95476 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CTDNEP1O95476 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CTDNEP1O95476 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CTDNEP1O95476 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
CTDNEP1O95476 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC17.91■□□□□ 0.46
CTDNEP1O95476 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CTDNEP1O95476 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CTDNEP1O95476 AC099063.4-201ENST00000641099 1602 ntBASIC17.91■□□□□ 0.46
CTDNEP1O95476 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CTDNEP1O95476 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CTDNEP1O95476 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CTDNEP1O95476 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
CTDNEP1O95476 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
CTDNEP1O95476 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CTDNEP1O95476 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CTDNEP1O95476 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CTDNEP1O95476 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC17.91■□□□□ 0.46
CTDNEP1O95476 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CTDNEP1O95476 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
CTDNEP1O95476 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC17.91■□□□□ 0.46
CTDNEP1O95476 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CTDNEP1O95476 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC17.91■□□□□ 0.46
CTDNEP1O95476 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC17.91■□□□□ 0.46
CTDNEP1O95476 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
CTDNEP1O95476 RN7SL399P-201ENST00000471648 279 ntBASIC17.91■□□□□ 0.46
CTDNEP1O95476 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CTDNEP1O95476 FAM86LP-201ENST00000478302 853 ntBASIC17.91■□□□□ 0.46
CTDNEP1O95476 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC17.91■□□□□ 0.46
CTDNEP1O95476 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC17.91■□□□□ 0.46
CTDNEP1O95476 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC17.91■□□□□ 0.46
CTDNEP1O95476 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC17.91■□□□□ 0.46
CTDNEP1O95476 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC17.91■□□□□ 0.46
CTDNEP1O95476 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC17.91■□□□□ 0.46
CTDNEP1O95476 SAMD11P1-201ENST00000571429 661 ntBASIC17.91■□□□□ 0.46
CTDNEP1O95476 INO80C-206ENST00000586489 594 ntTSL 3 BASIC17.91■□□□□ 0.46
CTDNEP1O95476 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC17.91■□□□□ 0.46
CTDNEP1O95476 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
CTDNEP1O95476 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
CTDNEP1O95476 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CTDNEP1O95476 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CTDNEP1O95476 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms