Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC12.54□□□□□ -0.4
HOXA3O43365 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC12.54□□□□□ -0.4
HOXA3O43365 AC007551.1-201ENST00000457394 519 ntBASIC12.54□□□□□ -0.4
HOXA3O43365 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC12.54□□□□□ -0.4
HOXA3O43365 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC12.54□□□□□ -0.4
HOXA3O43365 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC12.54□□□□□ -0.4
HOXA3O43365 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC12.54□□□□□ -0.4
HOXA3O43365 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC12.54□□□□□ -0.4
HOXA3O43365 CMC2-214ENST00000565925 640 ntTSL 5 BASIC12.54□□□□□ -0.4
HOXA3O43365 AP001063.1-201ENST00000568332 529 ntBASIC12.54□□□□□ -0.4
HOXA3O43365 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC12.54□□□□□ -0.4
HOXA3O43365 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC12.54□□□□□ -0.4
HOXA3O43365 GPX4-206ENST00000588919 803 ntTSL 2 BASIC12.54□□□□□ -0.4
HOXA3O43365 AC000095.1-201ENST00000603208 874 ntBASIC12.54□□□□□ -0.4
HOXA3O43365 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC12.54□□□□□ -0.4
HOXA3O43365 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC12.54□□□□□ -0.4
HOXA3O43365 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC12.54□□□□□ -0.4
HOXA3O43365 MYB-201ENST00000316528 3571 ntTSL 5 BASIC12.54□□□□□ -0.4
HOXA3O43365 MYB-241ENST00000616088 3573 ntTSL 5 BASIC12.54□□□□□ -0.4
HOXA3O43365 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HOXA3O43365 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HOXA3O43365 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HOXA3O43365 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HOXA3O43365 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HOXA3O43365 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HOXA3O43365 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HOXA3O43365 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HOXA3O43365 TP73-213ENST00000604479 1623 ntTSL 5 BASIC12.54□□□□□ -0.4
HOXA3O43365 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
HOXA3O43365 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC12.54□□□□□ -0.4
HOXA3O43365 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HOXA3O43365 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
HOXA3O43365 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC12.54□□□□□ -0.4
HOXA3O43365 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC12.54□□□□□ -0.4
HOXA3O43365 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
HOXA3O43365 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC12.54□□□□□ -0.4
HOXA3O43365 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA3O43365 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA3O43365 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC12.53□□□□□ -0.4
HOXA3O43365 USE1-206ENST00000595101 1776 ntTSL 2 BASIC12.53□□□□□ -0.4
HOXA3O43365 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA3O43365 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA3O43365 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC12.53□□□□□ -0.4
HOXA3O43365 CYP2AB1P-202ENST00000454440 1456 ntBASIC12.53□□□□□ -0.4
HOXA3O43365 SP100-205ENST00000409824 1802 ntTSL 5 BASIC12.53□□□□□ -0.4
HOXA3O43365 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC12.53□□□□□ -0.4
HOXA3O43365 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
HOXA3O43365 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC12.53□□□□□ -0.4
HOXA3O43365 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA3O43365 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC12.53□□□□□ -0.4
HOXA3O43365 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC12.53□□□□□ -0.4
HOXA3O43365 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA3O43365 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC12.53□□□□□ -0.4
HOXA3O43365 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA3O43365 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC12.53□□□□□ -0.4
HOXA3O43365 AC092364.2-201ENST00000596710 2692 ntBASIC12.53□□□□□ -0.4
HOXA3O43365 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
HOXA3O43365 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
HOXA3O43365 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
HOXA3O43365 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA3O43365 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC12.53□□□□□ -0.4
HOXA3O43365 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC12.53□□□□□ -0.4
HOXA3O43365 FAM21FP-201ENST00000426241 1131 ntBASIC12.53□□□□□ -0.4
HOXA3O43365 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC12.53□□□□□ -0.4
HOXA3O43365 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA3O43365 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
HOXA3O43365 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC12.53□□□□□ -0.4
HOXA3O43365 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC12.53□□□□□ -0.4
HOXA3O43365 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
HOXA3O43365 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC12.53□□□□□ -0.4
HOXA3O43365 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC12.53□□□□□ -0.4
HOXA3O43365 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC12.53□□□□□ -0.4
HOXA3O43365 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC12.53□□□□□ -0.4
HOXA3O43365 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA3O43365 AC005252.2-201ENST00000624630 1141 ntBASIC12.53□□□□□ -0.4
HOXA3O43365 HADH-212ENST00000638621 741 ntTSL 5 BASIC12.53□□□□□ -0.4
HOXA3O43365 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA3O43365 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA3O43365 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC12.53□□□□□ -0.4
HOXA3O43365 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC12.53□□□□□ -0.4
HOXA3O43365 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA3O43365 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC12.53□□□□□ -0.4
HOXA3O43365 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA3O43365 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA3O43365 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA3O43365 MSTO2P-201ENST00000314835 1709 ntBASIC12.53□□□□□ -0.4
HOXA3O43365 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC12.53□□□□□ -0.4
HOXA3O43365 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA3O43365 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA3O43365 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA3O43365 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA3O43365 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA3O43365 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC12.53□□□□□ -0.4
HOXA3O43365 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA3O43365 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
HOXA3O43365 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
HOXA3O43365 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
HOXA3O43365 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
HOXA3O43365 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC12.53□□□□□ -0.4
HOXA3O43365 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms