Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC12.6□□□□□ -0.39
HMGB3O15347 MIR5100-201ENST00000579544 119 ntBASIC12.6□□□□□ -0.39
HMGB3O15347 NKAPP1-205ENST00000585790 367 ntBASIC12.6□□□□□ -0.39
HMGB3O15347 AC099336.1-202ENST00000602961 463 ntBASIC12.6□□□□□ -0.39
HMGB3O15347 AC012306.2-201ENST00000609350 630 ntBASIC12.6□□□□□ -0.39
HMGB3O15347 HK2-201ENST00000290573 5772 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HMGB3O15347 BAZ2A-201ENST00000379441 8831 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
HMGB3O15347 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
HMGB3O15347 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC12.6□□□□□ -0.39
HMGB3O15347 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC12.6□□□□□ -0.39
HMGB3O15347 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
HMGB3O15347 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
HMGB3O15347 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HMGB3O15347 CREBBP-202ENST00000382070 7598 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HMGB3O15347 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HMGB3O15347 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC12.6□□□□□ -0.39
HMGB3O15347 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HMGB3O15347 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC12.6□□□□□ -0.39
HMGB3O15347 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HMGB3O15347 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC12.6□□□□□ -0.39
HMGB3O15347 URGCP-201ENST00000336086 5658 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
HMGB3O15347 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC12.6□□□□□ -0.39
HMGB3O15347 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC12.6□□□□□ -0.39
HMGB3O15347 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HMGB3O15347 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HMGB3O15347 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HMGB3O15347 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
HMGB3O15347 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
HMGB3O15347 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HMGB3O15347 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC12.6□□□□□ -0.39
HMGB3O15347 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HMGB3O15347 BCL2L11-217ENST00000610735 5120 ntTSL 5 BASIC12.6□□□□□ -0.39
HMGB3O15347 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC12.6□□□□□ -0.39
HMGB3O15347 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC12.6□□□□□ -0.39
HMGB3O15347 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
HMGB3O15347 AC107918.4-201ENST00000641966 3141 ntBASIC12.6□□□□□ -0.39
HMGB3O15347 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
HMGB3O15347 DNMT1-201ENST00000340748 5408 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HMGB3O15347 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
HMGB3O15347 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HMGB3O15347 BRWD1-204ENST00000380800 7605 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HMGB3O15347 MED25-212ENST00000618715 1467 ntTSL 5 BASIC12.59□□□□□ -0.39
HMGB3O15347 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC12.59□□□□□ -0.39
HMGB3O15347 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
HMGB3O15347 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HMGB3O15347 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
HMGB3O15347 DMBT1-201ENST00000330163 5802 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HMGB3O15347 DMBT1-206ENST00000368956 5802 ntTSL 5 BASIC12.59□□□□□ -0.39
HMGB3O15347 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HMGB3O15347 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC12.59□□□□□ -0.39
HMGB3O15347 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC12.59□□□□□ -0.39
HMGB3O15347 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
HMGB3O15347 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC12.59□□□□□ -0.39
HMGB3O15347 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HMGB3O15347 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
HMGB3O15347 AC011477.6-201ENST00000604980 1927 ntBASIC12.59□□□□□ -0.39
HMGB3O15347 MRVI1-216ENST00000547195 6155 ntTSL 2 BASIC12.59□□□□□ -0.39
HMGB3O15347 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HMGB3O15347 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
HMGB3O15347 AC041040.2-201ENST00000622926 2899 ntBASIC12.59□□□□□ -0.39
HMGB3O15347 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
HMGB3O15347 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HMGB3O15347 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC12.59□□□□□ -0.39
HMGB3O15347 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HMGB3O15347 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
HMGB3O15347 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HMGB3O15347 HCG4-201ENST00000418983 998 ntBASIC12.59□□□□□ -0.39
HMGB3O15347 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC12.59□□□□□ -0.39
HMGB3O15347 AC005412.3-201ENST00000580309 715 ntBASIC12.59□□□□□ -0.39
HMGB3O15347 AL589182.2-201ENST00000619332 1049 ntBASIC12.59□□□□□ -0.39
HMGB3O15347 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HMGB3O15347 AC097493.4-201ENST00000641197 219 ntBASIC12.59□□□□□ -0.39
HMGB3O15347 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
HMGB3O15347 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC12.59□□□□□ -0.39
HMGB3O15347 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HMGB3O15347 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HMGB3O15347 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC12.59□□□□□ -0.39
HMGB3O15347 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HMGB3O15347 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
HMGB3O15347 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HMGB3O15347 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HMGB3O15347 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HMGB3O15347 PCCB-210ENST00000471595 6090 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
HMGB3O15347 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
HMGB3O15347 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HMGB3O15347 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HMGB3O15347 GCN1-201ENST00000300648 8675 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HMGB3O15347 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HMGB3O15347 JCAD-201ENST00000375377 9265 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
HMGB3O15347 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC12.58□□□□□ -0.39
HMGB3O15347 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC12.58□□□□□ -0.39
HMGB3O15347 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC12.58□□□□□ -0.39
HMGB3O15347 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.39
HMGB3O15347 SLIT2-204ENST00000504154 6390 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
HMGB3O15347 FANCC-202ENST00000375305 4504 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
HMGB3O15347 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HMGB3O15347 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC12.58□□□□□ -0.4
HMGB3O15347 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
HMGB3O15347 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
HMGB3O15347 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 68.4 ms