Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 SLED1-202ENST00000512051 380 ntBASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 AC027612.4-201ENST00000605371 583 ntBASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 COQ4-205ENST00000609948 956 ntTSL 2 BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 GPER1-207ENST00000619052 571 ntTSL 2 BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.15
HIF3AQ9Y2N7 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
HIF3AQ9Y2N7 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
HIF3AQ9Y2N7 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
HIF3AQ9Y2N7 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC14.08□□□□□ -0.15
HIF3AQ9Y2N7 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
HIF3AQ9Y2N7 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
HIF3AQ9Y2N7 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC14.08□□□□□ -0.15
HIF3AQ9Y2N7 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
HIF3AQ9Y2N7 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 USP40-206ENST00000443711 628 ntTSL 2 BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 NIFKP4-201ENST00000567275 1192 ntBASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 AC025048.3-201ENST00000590609 569 ntBASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 AC005702.4-201ENST00000618393 416 ntBASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 AL033527.5-202ENST00000641632 1098 ntBASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 AC134684.3-201ENST00000641758 218 ntBASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 MROH4P-201ENST00000431302 1578 ntBASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 AMT-224ENST00000635808 1610 ntTSL 5 BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC14.08□□□□□ -0.16
HIF3AQ9Y2N7 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 MST1L-201ENST00000442552 2185 ntBASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HIF3AQ9Y2N7 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms