Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LIMA1Q9UHB6 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LIMA1Q9UHB6 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LIMA1Q9UHB6 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC17■□□□□ 0.31
LIMA1Q9UHB6 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
LIMA1Q9UHB6 AL022342.1-201ENST00000400363 863 ntBASIC17■□□□□ 0.31
LIMA1Q9UHB6 AL080243.2-201ENST00000418783 582 ntBASIC17■□□□□ 0.31
LIMA1Q9UHB6 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC17■□□□□ 0.31
LIMA1Q9UHB6 AP000344.2-201ENST00000512987 629 ntBASIC17■□□□□ 0.31
LIMA1Q9UHB6 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
LIMA1Q9UHB6 CCND1-203ENST00000536559 553 ntTSL 3 BASIC17■□□□□ 0.31
LIMA1Q9UHB6 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC17■□□□□ 0.31
LIMA1Q9UHB6 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
LIMA1Q9UHB6 AC025048.3-201ENST00000590609 569 ntBASIC17■□□□□ 0.31
LIMA1Q9UHB6 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC17■□□□□ 0.31
LIMA1Q9UHB6 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC17■□□□□ 0.31
LIMA1Q9UHB6 AC005702.4-201ENST00000618393 416 ntBASIC17■□□□□ 0.31
LIMA1Q9UHB6 MIR6069-201ENST00000620069 79 ntBASIC17■□□□□ 0.31
LIMA1Q9UHB6 HOTTIP_1.1-201ENST00000620415 57 ntBASIC17■□□□□ 0.31
LIMA1Q9UHB6 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC17■□□□□ 0.31
LIMA1Q9UHB6 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC17■□□□□ 0.31
LIMA1Q9UHB6 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LIMA1Q9UHB6 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC17■□□□□ 0.31
LIMA1Q9UHB6 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LIMA1Q9UHB6 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LIMA1Q9UHB6 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
LIMA1Q9UHB6 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC17■□□□□ 0.31
LIMA1Q9UHB6 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
LIMA1Q9UHB6 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 RPL30-202ENST00000396070 440 ntTSL 2 BASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 RPL13P2-201ENST00000440687 659 ntBASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 TBCB-211ENST00000589996 724 ntTSL 3 BASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 C1R-202ENST00000536053 2347 ntTSL 2 BASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 REXO1L4P-201ENST00000605109 1937 ntBASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 AC012508.2-201ENST00000567613 1472 ntBASIC16.99■□□□□ 0.31
LIMA1Q9UHB6 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 DNAJB3-201ENST00000446806 729 ntBASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 AC004835.2-201ENST00000603762 682 ntBASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 AC025181.2-201ENST00000606994 802 ntBASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC16.98■□□□□ 0.31
LIMA1Q9UHB6 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms