Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC19.77■□□□□ 0.76
CHMP4AQ9BY43 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC19.77■□□□□ 0.76
CHMP4AQ9BY43 RPS15-205ENST00000586686 562 ntTSL 5 BASIC19.77■□□□□ 0.76
CHMP4AQ9BY43 RPS15-208ENST00000591804 711 ntTSL 5 BASIC19.77■□□□□ 0.76
CHMP4AQ9BY43 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHMP4AQ9BY43 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC19.77■□□□□ 0.76
CHMP4AQ9BY43 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHMP4AQ9BY43 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC19.77■□□□□ 0.76
CHMP4AQ9BY43 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC19.77■□□□□ 0.76
CHMP4AQ9BY43 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC19.77■□□□□ 0.76
CHMP4AQ9BY43 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
CHMP4AQ9BY43 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CHMP4AQ9BY43 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC19.77■□□□□ 0.76
CHMP4AQ9BY43 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
CHMP4AQ9BY43 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
CHMP4AQ9BY43 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 AC007787.1-201ENST00000588095 1583 ntBASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 LBX2-201ENST00000341396 886 ntTSL 3 BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 MGST3-203ENST00000367885 680 ntTSL 2 BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 AP001889.1-201ENST00000525414 633 ntBASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 AC090616.6-203ENST00000579186 1945 ntBASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 CICP13-201ENST00000422015 2789 ntBASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CHMP4AQ9BY43 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
CHMP4AQ9BY43 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CHMP4AQ9BY43 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC19.75■□□□□ 0.75
CHMP4AQ9BY43 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CHMP4AQ9BY43 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CHMP4AQ9BY43 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CHMP4AQ9BY43 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CHMP4AQ9BY43 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CHMP4AQ9BY43 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CHMP4AQ9BY43 MXI1-205ENST00000393134 889 ntTSL 2 BASIC19.75■□□□□ 0.75
CHMP4AQ9BY43 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CHMP4AQ9BY43 HIST1H2BPS3-201ENST00000419683 341 ntBASIC19.75■□□□□ 0.75
CHMP4AQ9BY43 AC234783.1-201ENST00000441761 496 ntBASIC19.75■□□□□ 0.75
CHMP4AQ9BY43 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
CHMP4AQ9BY43 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC19.75■□□□□ 0.75
CHMP4AQ9BY43 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC19.75■□□□□ 0.75
CHMP4AQ9BY43 RPL28-206ENST00000558752 671 ntTSL 3 BASIC19.75■□□□□ 0.75
CHMP4AQ9BY43 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC19.75■□□□□ 0.75
CHMP4AQ9BY43 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC19.75■□□□□ 0.75
CHMP4AQ9BY43 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC19.75■□□□□ 0.75
CHMP4AQ9BY43 AL359881.2-201ENST00000602973 570 ntBASIC19.75■□□□□ 0.75
CHMP4AQ9BY43 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CHMP4AQ9BY43 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CHMP4AQ9BY43 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CHMP4AQ9BY43 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CHMP4AQ9BY43 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CHMP4AQ9BY43 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC19.75■□□□□ 0.75
CHMP4AQ9BY43 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC19.75■□□□□ 0.75
CHMP4AQ9BY43 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
CHMP4AQ9BY43 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CHMP4AQ9BY43 STK33-217ENST00000534493 1895 ntTSL 2 BASIC19.75■□□□□ 0.75
CHMP4AQ9BY43 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CHMP4AQ9BY43 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CHMP4AQ9BY43 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
CHMP4AQ9BY43 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
CHMP4AQ9BY43 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms