Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC13.29□□□□□ -0.28
COL12A1Q99715 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL12A1Q99715 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC13.29□□□□□ -0.28
COL12A1Q99715 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL12A1Q99715 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL12A1Q99715 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
COL12A1Q99715 OST4-201ENST00000429985 559 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
COL12A1Q99715 LINC01875-201ENST00000454477 660 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL12A1Q99715 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL12A1Q99715 MRPL22P1-201ENST00000505398 616 ntBASIC13.29□□□□□ -0.28
COL12A1Q99715 AC084781.1-201ENST00000613737 656 ntBASIC13.29□□□□□ -0.28
COL12A1Q99715 AC090510.3-201ENST00000615831 821 ntBASIC13.29□□□□□ -0.28
COL12A1Q99715 GPR39-203ENST00000622084 900 ntTSL 5 BASIC13.29□□□□□ -0.28
COL12A1Q99715 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC13.29□□□□□ -0.28
COL12A1Q99715 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
COL12A1Q99715 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL12A1Q99715 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL12A1Q99715 ALOX12P2-203ENST00000570921 1945 ntBASIC13.29□□□□□ -0.28
COL12A1Q99715 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL12A1Q99715 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC13.29□□□□□ -0.28
COL12A1Q99715 AIRN-201ENST00000601203 4374 ntBASIC13.29□□□□□ -0.28
COL12A1Q99715 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
COL12A1Q99715 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC13.29□□□□□ -0.28
COL12A1Q99715 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
COL12A1Q99715 ATXN3-201ENST00000340660 1205 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL12A1Q99715 PHACTR1-203ENST00000379335 943 ntTSL 2 BASIC13.29□□□□□ -0.28
COL12A1Q99715 AC114812.1-204ENST00000449669 728 ntBASIC13.29□□□□□ -0.28
COL12A1Q99715 PMEL-214ENST00000550447 901 ntTSL 3 BASIC13.29□□□□□ -0.28
COL12A1Q99715 AL353622.2-201ENST00000605846 425 ntBASIC13.29□□□□□ -0.28
COL12A1Q99715 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL12A1Q99715 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
COL12A1Q99715 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC13.29□□□□□ -0.28
COL12A1Q99715 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL12A1Q99715 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC13.29□□□□□ -0.28
COL12A1Q99715 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL12A1Q99715 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
COL12A1Q99715 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
COL12A1Q99715 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
COL12A1Q99715 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
COL12A1Q99715 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL12A1Q99715 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL12A1Q99715 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC13.29□□□□□ -0.28
COL12A1Q99715 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
COL12A1Q99715 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
COL12A1Q99715 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL12A1Q99715 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL12A1Q99715 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL12A1Q99715 HHLA3-202ENST00000361764 692 ntAPPRIS P3 TSL 2 BASIC13.28□□□□□ -0.28
COL12A1Q99715 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL12A1Q99715 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL12A1Q99715 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC13.28□□□□□ -0.28
COL12A1Q99715 ACTBP8-201ENST00000403258 1108 ntBASIC13.28□□□□□ -0.28
COL12A1Q99715 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC13.28□□□□□ -0.28
COL12A1Q99715 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC13.28□□□□□ -0.28
COL12A1Q99715 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC13.28□□□□□ -0.28
COL12A1Q99715 IGHEP1-201ENST00000521393 651 ntBASIC13.28□□□□□ -0.28
COL12A1Q99715 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC13.28□□□□□ -0.28
COL12A1Q99715 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL12A1Q99715 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC13.28□□□□□ -0.28
COL12A1Q99715 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC13.28□□□□□ -0.28
COL12A1Q99715 FAM90A2P-201ENST00000511144 1395 ntBASIC13.28□□□□□ -0.28
COL12A1Q99715 FAM90A25P-201ENST00000528404 1395 ntBASIC13.28□□□□□ -0.28
COL12A1Q99715 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL12A1Q99715 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC13.28□□□□□ -0.28
COL12A1Q99715 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
COL12A1Q99715 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC13.28□□□□□ -0.28
COL12A1Q99715 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC13.28□□□□□ -0.28
COL12A1Q99715 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
COL12A1Q99715 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC13.28□□□□□ -0.28
COL12A1Q99715 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL12A1Q99715 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC13.28□□□□□ -0.28
COL12A1Q99715 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL12A1Q99715 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL12A1Q99715 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC13.28□□□□□ -0.28
COL12A1Q99715 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
COL12A1Q99715 AC011270.2-201ENST00000624293 2550 ntBASIC13.28□□□□□ -0.28
COL12A1Q99715 MBLAC2-202ENST00000514906 1936 ntBASIC13.28□□□□□ -0.28
COL12A1Q99715 PHKG1P2-201ENST00000457537 863 ntBASIC13.28□□□□□ -0.28
COL12A1Q99715 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
COL12A1Q99715 AC008805.1-201ENST00000590892 364 ntBASIC13.28□□□□□ -0.28
COL12A1Q99715 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC13.28□□□□□ -0.28
COL12A1Q99715 AL450472.2-201ENST00000603663 1156 ntBASIC13.28□□□□□ -0.28
COL12A1Q99715 NAMA-206ENST00000605377 509 ntTSL 5 BASIC13.28□□□□□ -0.28
COL12A1Q99715 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL12A1Q99715 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL12A1Q99715 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC13.28□□□□□ -0.28
COL12A1Q99715 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL12A1Q99715 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL12A1Q99715 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC13.28□□□□□ -0.28
COL12A1Q99715 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC13.28□□□□□ -0.28
COL12A1Q99715 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL12A1Q99715 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL12A1Q99715 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL12A1Q99715 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL12A1Q99715 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL12A1Q99715 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
COL12A1Q99715 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL12A1Q99715 AC244197.1-201ENST00000456494 951 ntBASIC13.28□□□□□ -0.28
COL12A1Q99715 AC084752.1-201ENST00000509766 622 ntBASIC13.28□□□□□ -0.28
COL12A1Q99715 POLD4-208ENST00000532830 904 ntTSL 3 BASIC13.28□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 97.7 ms