Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 OR2I1P-209ENST00000641730 5365 ntBASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 AC239800.4-201ENST00000603712 296 ntBASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 5S_rRNA.22-201ENST00000614916 106 ntBASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 AC007431.3-201ENST00000623221 587 ntBASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 TKT-202ENST00000423516 2075 ntTSL 2 BASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4CQ96CF2 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 AC098850.1-201ENST00000419919 790 ntBASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 TARDBPP1-201ENST00000442013 1203 ntBASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 AC005225.4-201ENST00000557330 545 ntBASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 LCK-206ENST00000373564 2137 ntTSL 5 BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 AC090616.6-203ENST00000579186 1945 ntBASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 CICP13-201ENST00000422015 2789 ntBASIC18.59■□□□□ 0.57
CHMP4CQ96CF2 FES-204ENST00000414248 2327 ntTSL 2 BASIC18.58■□□□□ 0.57
CHMP4CQ96CF2 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CHMP4CQ96CF2 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CHMP4CQ96CF2 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.57
CHMP4CQ96CF2 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CHMP4CQ96CF2 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CHMP4CQ96CF2 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CHMP4CQ96CF2 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CHMP4CQ96CF2 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CHMP4CQ96CF2 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CHMP4CQ96CF2 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms