Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 UBALD1-205ENST00000590891 2641 ntBASIC15.37■□□□□ 0.05
TTC28Q96AY4 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
TTC28Q96AY4 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TTC28Q96AY4 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.37■□□□□ 0.05
TTC28Q96AY4 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC15.37■□□□□ 0.05
TTC28Q96AY4 SUCLA2-205ENST00000470760 1445 ntTSL 2 BASIC15.37■□□□□ 0.05
TTC28Q96AY4 KRT8P31-201ENST00000504812 1408 ntBASIC15.37■□□□□ 0.05
TTC28Q96AY4 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC15.37■□□□□ 0.05
TTC28Q96AY4 CSHL1-201ENST00000259003 739 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TTC28Q96AY4 AC106827.1-201ENST00000366454 431 ntBASIC15.37■□□□□ 0.05
TTC28Q96AY4 LSM5-207ENST00000410044 687 ntTSL 3 BASIC15.37■□□□□ 0.05
TTC28Q96AY4 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC15.37■□□□□ 0.05
TTC28Q96AY4 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TTC28Q96AY4 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TTC28Q96AY4 CSHL1-206ENST00000450719 973 ntTSL 2 BASIC15.37■□□□□ 0.05
TTC28Q96AY4 BPIFB5P-201ENST00000457066 1099 ntBASIC15.37■□□□□ 0.05
TTC28Q96AY4 DIO3OS-211ENST00000557532 712 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TTC28Q96AY4 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
TTC28Q96AY4 AC008972.2-201ENST00000606587 494 ntBASIC15.37■□□□□ 0.05
TTC28Q96AY4 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TTC28Q96AY4 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
TTC28Q96AY4 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TTC28Q96AY4 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
TTC28Q96AY4 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TTC28Q96AY4 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC15.36■□□□□ 0.05
TTC28Q96AY4 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TTC28Q96AY4 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
TTC28Q96AY4 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC15.36■□□□□ 0.05
TTC28Q96AY4 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC15.36■□□□□ 0.05
TTC28Q96AY4 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC15.36■□□□□ 0.05
TTC28Q96AY4 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
TTC28Q96AY4 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
TTC28Q96AY4 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC15.36■□□□□ 0.05
TTC28Q96AY4 AHCYP3-201ENST00000420053 1279 ntBASIC15.36■□□□□ 0.05
TTC28Q96AY4 HNRNPA1P25-201ENST00000422644 937 ntBASIC15.36■□□□□ 0.05
TTC28Q96AY4 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC15.36■□□□□ 0.05
TTC28Q96AY4 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC15.36■□□□□ 0.05
TTC28Q96AY4 BCRP4-201ENST00000506079 804 ntBASIC15.36■□□□□ 0.05
TTC28Q96AY4 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC15.36■□□□□ 0.05
TTC28Q96AY4 AC022966.2-201ENST00000587434 367 ntBASIC15.36■□□□□ 0.05
TTC28Q96AY4 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC15.36■□□□□ 0.05
TTC28Q96AY4 AC021321.1-201ENST00000607397 1113 ntBASIC15.36■□□□□ 0.05
TTC28Q96AY4 AP006248.1-201ENST00000610471 67 ntBASIC15.36■□□□□ 0.05
TTC28Q96AY4 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC15.36■□□□□ 0.05
TTC28Q96AY4 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
TTC28Q96AY4 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TTC28Q96AY4 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TTC28Q96AY4 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC15.36■□□□□ 0.05
TTC28Q96AY4 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
TTC28Q96AY4 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
TTC28Q96AY4 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TTC28Q96AY4 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
TTC28Q96AY4 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TTC28Q96AY4 TNXA-203ENST00000507684 2038 ntBASIC15.36■□□□□ 0.05
TTC28Q96AY4 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC15.36■□□□□ 0.05
TTC28Q96AY4 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TTC28Q96AY4 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TTC28Q96AY4 THYN1-203ENST00000392594 943 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TTC28Q96AY4 AL645937.2-201ENST00000396808 931 ntBASIC15.36■□□□□ 0.05
TTC28Q96AY4 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC15.36■□□□□ 0.05
TTC28Q96AY4 LINC00824-204ENST00000520766 597 ntTSL 5 BASIC15.36■□□□□ 0.05
TTC28Q96AY4 FXYD6-208ENST00000529335 708 ntTSL 3 BASIC15.36■□□□□ 0.05
TTC28Q96AY4 AL162632.1-201ENST00000546784 548 ntTSL 4 BASIC15.36■□□□□ 0.05
TTC28Q96AY4 MIR4640-201ENST00000581824 90 ntBASIC15.36■□□□□ 0.05
TTC28Q96AY4 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC15.36■□□□□ 0.05
TTC28Q96AY4 CTSH-218ENST00000615999 972 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TTC28Q96AY4 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TTC28Q96AY4 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
TTC28Q96AY4 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
TTC28Q96AY4 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TTC28Q96AY4 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC15.36■□□□□ 0.05
TTC28Q96AY4 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
TTC28Q96AY4 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TTC28Q96AY4 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
TTC28Q96AY4 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TTC28Q96AY4 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
TTC28Q96AY4 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC15.35■□□□□ 0.05
TTC28Q96AY4 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TTC28Q96AY4 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC15.35■□□□□ 0.05
TTC28Q96AY4 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TTC28Q96AY4 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC15.35■□□□□ 0.05
TTC28Q96AY4 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC15.35■□□□□ 0.05
TTC28Q96AY4 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC15.35■□□□□ 0.05
TTC28Q96AY4 AC068867.1-201ENST00000559855 150 ntBASIC15.35■□□□□ 0.05
TTC28Q96AY4 RN7SL602P-201ENST00000578326 324 ntBASIC15.35■□□□□ 0.05
TTC28Q96AY4 RN7SL718P-201ENST00000581254 303 ntBASIC15.35■□□□□ 0.05
TTC28Q96AY4 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC15.35■□□□□ 0.05
TTC28Q96AY4 Metazoa_SRP.210-201ENST00000637921 244 ntBASIC15.35■□□□□ 0.05
TTC28Q96AY4 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TTC28Q96AY4 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC15.35■□□□□ 0.05
TTC28Q96AY4 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TTC28Q96AY4 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TTC28Q96AY4 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
TTC28Q96AY4 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC15.35■□□□□ 0.05
TTC28Q96AY4 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC15.35■□□□□ 0.05
TTC28Q96AY4 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TTC28Q96AY4 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
TTC28Q96AY4 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
TTC28Q96AY4 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TTC28Q96AY4 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 80.3 ms