Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
HMGB4Q8WW32 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
HMGB4Q8WW32 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC15.57■□□□□ 0.08
HMGB4Q8WW32 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
HMGB4Q8WW32 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
HMGB4Q8WW32 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HMGB4Q8WW32 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC15.57■□□□□ 0.08
HMGB4Q8WW32 AC011270.2-201ENST00000624293 2550 ntBASIC15.57■□□□□ 0.08
HMGB4Q8WW32 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC15.57■□□□□ 0.08
HMGB4Q8WW32 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC15.57■□□□□ 0.08
HMGB4Q8WW32 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HMGB4Q8WW32 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
HMGB4Q8WW32 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
HMGB4Q8WW32 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 AP003680.1-201ENST00000598970 3660 ntBASIC15.56■□□□□ 0.08
HMGB4Q8WW32 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 RNU1-114P-201ENST00000365297 166 ntBASIC15.56■□□□□ 0.08
HMGB4Q8WW32 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 MPV17-205ENST00000402310 906 ntTSL 5 BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 ECM1P1-201ENST00000604092 1279 ntBASIC15.56■□□□□ 0.08
HMGB4Q8WW32 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 AL596087.1-201ENST00000400979 1969 ntBASIC15.56■□□□□ 0.08
HMGB4Q8WW32 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
HMGB4Q8WW32 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 RPS3-201ENST00000278572 907 ntTSL 3 BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 KLF2P2-201ENST00000416807 1039 ntBASIC15.55■□□□□ 0.08
HMGB4Q8WW32 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 TBCB-211ENST00000589996 724 ntTSL 3 BASIC15.55■□□□□ 0.08
HMGB4Q8WW32 KLK3-211ENST00000597483 810 ntTSL 2 BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms