Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP43Q70EL4 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP43Q70EL4 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP43Q70EL4 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC14.29□□□□□ -0.12
USP43Q70EL4 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC14.29□□□□□ -0.12
USP43Q70EL4 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
USP43Q70EL4 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
USP43Q70EL4 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
USP43Q70EL4 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
USP43Q70EL4 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
USP43Q70EL4 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
USP43Q70EL4 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
USP43Q70EL4 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC14.29□□□□□ -0.12
USP43Q70EL4 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
USP43Q70EL4 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC14.29□□□□□ -0.12
USP43Q70EL4 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
USP43Q70EL4 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
USP43Q70EL4 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
USP43Q70EL4 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
USP43Q70EL4 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC14.29□□□□□ -0.12
USP43Q70EL4 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
USP43Q70EL4 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
USP43Q70EL4 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
USP43Q70EL4 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
USP43Q70EL4 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
USP43Q70EL4 DPM2-202ENST00000373110 738 ntTSL 2 BASIC14.29□□□□□ -0.12
USP43Q70EL4 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
USP43Q70EL4 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
USP43Q70EL4 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
USP43Q70EL4 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC14.29□□□□□ -0.12
USP43Q70EL4 METTL26-205ENST00000397666 726 ntTSL 2 BASIC14.29□□□□□ -0.12
USP43Q70EL4 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC14.29□□□□□ -0.12
USP43Q70EL4 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC14.29□□□□□ -0.12
USP43Q70EL4 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC14.29□□□□□ -0.12
USP43Q70EL4 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC14.29□□□□□ -0.12
USP43Q70EL4 KRT18P27-201ENST00000427733 1299 ntBASIC14.29□□□□□ -0.12
USP43Q70EL4 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC14.29□□□□□ -0.12
USP43Q70EL4 AP006288.1-201ENST00000446065 395 ntBASIC14.29□□□□□ -0.12
USP43Q70EL4 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC14.29□□□□□ -0.12
USP43Q70EL4 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
USP43Q70EL4 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC14.29□□□□□ -0.12
USP43Q70EL4 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC14.29□□□□□ -0.12
USP43Q70EL4 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
USP43Q70EL4 REXO1L3P-201ENST00000622202 1288 ntBASIC14.29□□□□□ -0.12
USP43Q70EL4 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
USP43Q70EL4 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
USP43Q70EL4 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
USP43Q70EL4 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
USP43Q70EL4 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
USP43Q70EL4 AP002414.3-201ENST00000589352 1468 ntBASIC14.29□□□□□ -0.12
USP43Q70EL4 TOR1AIP1-201ENST00000271583 3044 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
USP43Q70EL4 Z82170.1-201ENST00000625081 3192 ntBASIC14.29□□□□□ -0.12
USP43Q70EL4 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
USP43Q70EL4 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
USP43Q70EL4 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
USP43Q70EL4 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC14.29□□□□□ -0.12
USP43Q70EL4 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
USP43Q70EL4 ILF3-AS1-201ENST00000591501 1983 ntBASIC14.29□□□□□ -0.12
USP43Q70EL4 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC14.29□□□□□ -0.12
USP43Q70EL4 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC14.29□□□□□ -0.12
USP43Q70EL4 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
USP43Q70EL4 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC14.29□□□□□ -0.12
USP43Q70EL4 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
USP43Q70EL4 AC099521.3-201ENST00000624251 2938 ntBASIC14.28□□□□□ -0.12
USP43Q70EL4 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
USP43Q70EL4 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC14.28□□□□□ -0.12
USP43Q70EL4 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
USP43Q70EL4 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
USP43Q70EL4 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
USP43Q70EL4 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
USP43Q70EL4 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
USP43Q70EL4 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC14.28□□□□□ -0.12
USP43Q70EL4 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
USP43Q70EL4 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
USP43Q70EL4 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
USP43Q70EL4 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
USP43Q70EL4 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
USP43Q70EL4 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC14.28□□□□□ -0.12
USP43Q70EL4 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC14.28□□□□□ -0.12
USP43Q70EL4 NME2-201ENST00000393183 568 ntTSL 2 BASIC14.28□□□□□ -0.12
USP43Q70EL4 CENPM-204ENST00000402420 688 ntTSL 5 BASIC14.28□□□□□ -0.12
USP43Q70EL4 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
USP43Q70EL4 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC14.28□□□□□ -0.12
USP43Q70EL4 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
USP43Q70EL4 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
USP43Q70EL4 STARD13-205ENST00000439831 945 ntTSL 2 BASIC14.28□□□□□ -0.12
USP43Q70EL4 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
USP43Q70EL4 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC14.28□□□□□ -0.12
USP43Q70EL4 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
USP43Q70EL4 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC14.28□□□□□ -0.12
USP43Q70EL4 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
USP43Q70EL4 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC14.28□□□□□ -0.12
USP43Q70EL4 EHF-205ENST00000527935 557 ntTSL 2 BASIC14.28□□□□□ -0.12
USP43Q70EL4 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC14.28□□□□□ -0.12
USP43Q70EL4 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC14.28□□□□□ -0.12
USP43Q70EL4 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
USP43Q70EL4 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
USP43Q70EL4 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC14.28□□□□□ -0.12
USP43Q70EL4 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
USP43Q70EL4 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 75.7 ms