Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
VPS53Q5VIR6 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS53Q5VIR6 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS53Q5VIR6 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 TOMM22P5-201ENST00000416399 439 ntBASIC18.8■□□□□ 0.6
VPS53Q5VIR6 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 FAM207CP-201ENST00000443486 507 ntBASIC18.8■□□□□ 0.6
VPS53Q5VIR6 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 AC009118.2-201ENST00000613275 655 ntBASIC18.8■□□□□ 0.6
VPS53Q5VIR6 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS53Q5VIR6 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS53Q5VIR6 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS53Q5VIR6 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS53Q5VIR6 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS53Q5VIR6 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS53Q5VIR6 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS53Q5VIR6 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
VPS53Q5VIR6 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS53Q5VIR6 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
VPS53Q5VIR6 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
VPS53Q5VIR6 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC18.79■□□□□ 0.6
VPS53Q5VIR6 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC18.79■□□□□ 0.6
VPS53Q5VIR6 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC18.79■□□□□ 0.6
VPS53Q5VIR6 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS53Q5VIR6 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC18.79■□□□□ 0.6
VPS53Q5VIR6 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC18.79■□□□□ 0.6
VPS53Q5VIR6 AC092364.2-202ENST00000597012 1073 ntBASIC18.79■□□□□ 0.6
VPS53Q5VIR6 YTHDF3-AS1-201ENST00000603538 718 ntBASIC18.79■□□□□ 0.6
VPS53Q5VIR6 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC18.79■□□□□ 0.6
VPS53Q5VIR6 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS53Q5VIR6 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
VPS53Q5VIR6 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
VPS53Q5VIR6 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS53Q5VIR6 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS53Q5VIR6 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS53Q5VIR6 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC18.79■□□□□ 0.6
VPS53Q5VIR6 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS53Q5VIR6 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS53Q5VIR6 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC18.79■□□□□ 0.6
VPS53Q5VIR6 TP73-209ENST00000603362 1668 ntTSL 5 BASIC18.79■□□□□ 0.6
VPS53Q5VIR6 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS53Q5VIR6 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS53Q5VIR6 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC18.79■□□□□ 0.6
VPS53Q5VIR6 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS53Q5VIR6 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
VPS53Q5VIR6 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS53Q5VIR6 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS53Q5VIR6 CLK3P2-201ENST00000427566 1453 ntBASIC18.78■□□□□ 0.6
VPS53Q5VIR6 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC18.78■□□□□ 0.6
VPS53Q5VIR6 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC18.78■□□□□ 0.6
VPS53Q5VIR6 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC18.78■□□□□ 0.6
VPS53Q5VIR6 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS53Q5VIR6 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS53Q5VIR6 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VPS53Q5VIR6 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC18.78■□□□□ 0.6
VPS53Q5VIR6 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS53Q5VIR6 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
VPS53Q5VIR6 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC18.78■□□□□ 0.6
VPS53Q5VIR6 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VPS53Q5VIR6 GOLGA6L11P-201ENST00000417252 1298 ntBASIC18.78■□□□□ 0.6
VPS53Q5VIR6 MEIS3P1-201ENST00000495167 958 ntBASIC18.78■□□□□ 0.6
VPS53Q5VIR6 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VPS53Q5VIR6 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC18.78■□□□□ 0.6
VPS53Q5VIR6 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms