Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
CCDC144BQ3MJ40 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC18.08■□□□□ 0.48
CCDC144BQ3MJ40 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC18.08■□□□□ 0.48
CCDC144BQ3MJ40 CICP13-201ENST00000422015 2789 ntBASIC18.08■□□□□ 0.48
CCDC144BQ3MJ40 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC144BQ3MJ40 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
CCDC144BQ3MJ40 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC18.08■□□□□ 0.48
CCDC144BQ3MJ40 MECR-202ENST00000373791 2416 ntTSL 2 BASIC18.08■□□□□ 0.48
CCDC144BQ3MJ40 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC144BQ3MJ40 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC144BQ3MJ40 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
CCDC144BQ3MJ40 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
CCDC144BQ3MJ40 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC18.07■□□□□ 0.48
CCDC144BQ3MJ40 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
CCDC144BQ3MJ40 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC18.07■□□□□ 0.48
CCDC144BQ3MJ40 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
CCDC144BQ3MJ40 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC144BQ3MJ40 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC18.07■□□□□ 0.48
CCDC144BQ3MJ40 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC144BQ3MJ40 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC144BQ3MJ40 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC144BQ3MJ40 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC18.07■□□□□ 0.48
CCDC144BQ3MJ40 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC18.07■□□□□ 0.48
CCDC144BQ3MJ40 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC144BQ3MJ40 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC144BQ3MJ40 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC144BQ3MJ40 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC18.07■□□□□ 0.48
CCDC144BQ3MJ40 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC18.07■□□□□ 0.48
CCDC144BQ3MJ40 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC144BQ3MJ40 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC18.07■□□□□ 0.48
CCDC144BQ3MJ40 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC18.07■□□□□ 0.48
CCDC144BQ3MJ40 RN7SL399P-201ENST00000471648 279 ntBASIC18.07■□□□□ 0.48
CCDC144BQ3MJ40 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC18.07■□□□□ 0.48
CCDC144BQ3MJ40 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC18.07■□□□□ 0.48
CCDC144BQ3MJ40 SNX29P1-201ENST00000548357 1007 ntBASIC18.07■□□□□ 0.48
CCDC144BQ3MJ40 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC18.07■□□□□ 0.48
CCDC144BQ3MJ40 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC18.07■□□□□ 0.48
CCDC144BQ3MJ40 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC18.07■□□□□ 0.48
CCDC144BQ3MJ40 MIR6775-201ENST00000617557 69 ntBASIC18.07■□□□□ 0.48
CCDC144BQ3MJ40 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC18.07■□□□□ 0.48
CCDC144BQ3MJ40 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC144BQ3MJ40 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
CCDC144BQ3MJ40 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC18.07■□□□□ 0.48
CCDC144BQ3MJ40 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC18.07■□□□□ 0.48
CCDC144BQ3MJ40 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
CCDC144BQ3MJ40 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 AL691432.1-201ENST00000596308 1422 ntBASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 RPL28-204ENST00000431533 590 ntTSL 2 BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 CROCCP4-201ENST00000457096 498 ntBASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 RPL28-206ENST00000558752 671 ntTSL 3 BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 AP005482.1-201ENST00000563722 1273 ntBASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 PAM16-204ENST00000571941 674 ntTSL 3 BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 AC015936.2-201ENST00000593177 259 ntBASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 AC010319.3-201ENST00000597028 470 ntBASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 COX11-210ENST00000639671 696 ntBASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
CCDC144BQ3MJ40 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC18.05■□□□□ 0.48
CCDC144BQ3MJ40 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CCDC144BQ3MJ40 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC144BQ3MJ40 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC18.05■□□□□ 0.48
CCDC144BQ3MJ40 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC144BQ3MJ40 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC144BQ3MJ40 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
CCDC144BQ3MJ40 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC144BQ3MJ40 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC144BQ3MJ40 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms