Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PKNOX1P55347 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
PKNOX1P55347 AC026396.1-201ENST00000419388 421 ntBASIC15.34■□□□□ 0.05
PKNOX1P55347 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC15.34■□□□□ 0.05
PKNOX1P55347 SUOX-214ENST00000551841 906 ntTSL 3 BASIC15.34■□□□□ 0.05
PKNOX1P55347 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC15.34■□□□□ 0.05
PKNOX1P55347 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PKNOX1P55347 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
PKNOX1P55347 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC15.34■□□□□ 0.05
PKNOX1P55347 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PKNOX1P55347 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC15.34■□□□□ 0.05
PKNOX1P55347 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PKNOX1P55347 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PKNOX1P55347 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PKNOX1P55347 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
PKNOX1P55347 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC15.34■□□□□ 0.05
PKNOX1P55347 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
PKNOX1P55347 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PKNOX1P55347 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC15.34■□□□□ 0.05
PKNOX1P55347 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
PKNOX1P55347 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC15.34■□□□□ 0.05
PKNOX1P55347 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PKNOX1P55347 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
PKNOX1P55347 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
PKNOX1P55347 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
PKNOX1P55347 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
PKNOX1P55347 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC15.33■□□□□ 0.05
PKNOX1P55347 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PKNOX1P55347 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PKNOX1P55347 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PKNOX1P55347 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC15.33■□□□□ 0.04
PKNOX1P55347 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PKNOX1P55347 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PKNOX1P55347 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PKNOX1P55347 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PKNOX1P55347 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
PKNOX1P55347 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PKNOX1P55347 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PKNOX1P55347 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC15.33■□□□□ 0.04
PKNOX1P55347 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
PKNOX1P55347 AL353705.2-201ENST00000428243 662 ntBASIC15.33■□□□□ 0.04
PKNOX1P55347 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC15.33■□□□□ 0.04
PKNOX1P55347 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
PKNOX1P55347 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC15.33■□□□□ 0.04
PKNOX1P55347 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PKNOX1P55347 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC15.33■□□□□ 0.04
PKNOX1P55347 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC15.33■□□□□ 0.04
PKNOX1P55347 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC15.33■□□□□ 0.04
PKNOX1P55347 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.33■□□□□ 0.04
PKNOX1P55347 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC15.33■□□□□ 0.04
PKNOX1P55347 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PKNOX1P55347 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PKNOX1P55347 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PKNOX1P55347 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC15.33■□□□□ 0.04
PKNOX1P55347 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PKNOX1P55347 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PKNOX1P55347 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
PKNOX1P55347 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC15.33■□□□□ 0.04
PKNOX1P55347 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
PKNOX1P55347 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC15.33■□□□□ 0.04
PKNOX1P55347 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
PKNOX1P55347 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PKNOX1P55347 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
PKNOX1P55347 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC15.33■□□□□ 0.04
PKNOX1P55347 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PKNOX1P55347 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
PKNOX1P55347 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PKNOX1P55347 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PKNOX1P55347 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PKNOX1P55347 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PKNOX1P55347 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PKNOX1P55347 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
PKNOX1P55347 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
PKNOX1P55347 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PKNOX1P55347 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PKNOX1P55347 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
PKNOX1P55347 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
PKNOX1P55347 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PKNOX1P55347 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC15.32■□□□□ 0.04
PKNOX1P55347 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
PKNOX1P55347 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC15.32■□□□□ 0.04
PKNOX1P55347 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC15.32■□□□□ 0.04
PKNOX1P55347 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PKNOX1P55347 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC15.32■□□□□ 0.04
PKNOX1P55347 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PKNOX1P55347 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
PKNOX1P55347 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
PKNOX1P55347 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC15.32■□□□□ 0.04
PKNOX1P55347 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC15.32■□□□□ 0.04
PKNOX1P55347 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
PKNOX1P55347 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC15.32■□□□□ 0.04
PKNOX1P55347 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC15.32■□□□□ 0.04
PKNOX1P55347 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC15.32■□□□□ 0.04
PKNOX1P55347 TSFM-210ENST00000550559 897 ntTSL 5 BASIC15.32■□□□□ 0.04
PKNOX1P55347 SPIB-207ENST00000597855 564 ntTSL 4 BASIC15.32■□□□□ 0.04
PKNOX1P55347 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PKNOX1P55347 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC15.32■□□□□ 0.04
PKNOX1P55347 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
PKNOX1P55347 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
PKNOX1P55347 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms