Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
MRE11P49959 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
MRE11P49959 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
MRE11P49959 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.51
MRE11P49959 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.51
MRE11P49959 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
MRE11P49959 STK33-217ENST00000534493 1895 ntTSL 2 BASIC18.26■□□□□ 0.51
MRE11P49959 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MRE11P49959 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MRE11P49959 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MRE11P49959 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MRE11P49959 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
MRE11P49959 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
MRE11P49959 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
MRE11P49959 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC18.26■□□□□ 0.51
MRE11P49959 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
MRE11P49959 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
MRE11P49959 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MRE11P49959 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC18.26■□□□□ 0.51
MRE11P49959 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
MRE11P49959 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
MRE11P49959 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
MRE11P49959 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
MRE11P49959 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MRE11P49959 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
MRE11P49959 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
MRE11P49959 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
MRE11P49959 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC18.26■□□□□ 0.51
MRE11P49959 S100A2-206ENST00000497140 697 ntTSL 2 BASIC18.26■□□□□ 0.51
MRE11P49959 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
MRE11P49959 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC18.26■□□□□ 0.51
MRE11P49959 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MRE11P49959 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC18.26■□□□□ 0.51
MRE11P49959 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC18.26■□□□□ 0.51
MRE11P49959 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC18.26■□□□□ 0.51
MRE11P49959 RPS15-212ENST00000593052 629 ntTSL 2 BASIC18.26■□□□□ 0.51
MRE11P49959 AC011467.2-201ENST00000598425 242 ntBASIC18.26■□□□□ 0.51
MRE11P49959 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC18.26■□□□□ 0.51
MRE11P49959 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC18.26■□□□□ 0.51
MRE11P49959 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
MRE11P49959 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MRE11P49959 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
MRE11P49959 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC18.26■□□□□ 0.51
MRE11P49959 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC18.26■□□□□ 0.51
MRE11P49959 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MRE11P49959 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC18.26■□□□□ 0.51
MRE11P49959 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC18.26■□□□□ 0.51
MRE11P49959 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
MRE11P49959 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
MRE11P49959 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC18.26■□□□□ 0.51
MRE11P49959 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
MRE11P49959 AL353732.1-201ENST00000569618 1459 ntBASIC18.26■□□□□ 0.51
MRE11P49959 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MRE11P49959 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
MRE11P49959 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MRE11P49959 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MRE11P49959 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
MRE11P49959 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
MRE11P49959 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC18.25■□□□□ 0.51
MRE11P49959 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
MRE11P49959 AC097376.2-205ENST00000610159 5334 ntBASIC18.25■□□□□ 0.51
MRE11P49959 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
MRE11P49959 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
MRE11P49959 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
MRE11P49959 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
MRE11P49959 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC18.25■□□□□ 0.51
MRE11P49959 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC18.25■□□□□ 0.51
MRE11P49959 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC18.25■□□□□ 0.51
MRE11P49959 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
MRE11P49959 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC18.25■□□□□ 0.51
MRE11P49959 CEND1P1-201ENST00000451006 455 ntBASIC18.25■□□□□ 0.51
MRE11P49959 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC18.25■□□□□ 0.51
MRE11P49959 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
MRE11P49959 NOP2-220ENST00000545915 630 ntTSL 2 BASIC18.25■□□□□ 0.51
MRE11P49959 RNF34-208ENST00000555076 593 ntTSL 3 BASIC18.25■□□□□ 0.51
MRE11P49959 GZMM-202ENST00000592501 941 ntTSL 3 BASIC18.25■□□□□ 0.51
MRE11P49959 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC18.25■□□□□ 0.51
MRE11P49959 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
MRE11P49959 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
MRE11P49959 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC18.25■□□□□ 0.51
MRE11P49959 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC18.25■□□□□ 0.51
MRE11P49959 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
MRE11P49959 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
MRE11P49959 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC18.25■□□□□ 0.51
MRE11P49959 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
MRE11P49959 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
MRE11P49959 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
MRE11P49959 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC18.24■□□□□ 0.51
MRE11P49959 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC18.24■□□□□ 0.51
MRE11P49959 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
MRE11P49959 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
MRE11P49959 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MRE11P49959 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MRE11P49959 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
MRE11P49959 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
MRE11P49959 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
MRE11P49959 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC18.24■□□□□ 0.51
MRE11P49959 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
MRE11P49959 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC18.24■□□□□ 0.51
MRE11P49959 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms