Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CTCFP49711 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
CTCFP49711 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC17.91■□□□□ 0.46
CTCFP49711 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CTCFP49711 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CTCFP49711 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC17.91■□□□□ 0.46
CTCFP49711 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
CTCFP49711 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CTCFP49711 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
CTCFP49711 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CTCFP49711 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CTCFP49711 ITGA9-AS1-205ENST00000438136 578 ntTSL 4 BASIC17.91■□□□□ 0.46
CTCFP49711 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CTCFP49711 KRT18P43-201ENST00000469825 1281 ntBASIC17.91■□□□□ 0.46
CTCFP49711 CSH2-206ENST00000560142 749 ntTSL 5 BASIC17.91■□□□□ 0.46
CTCFP49711 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC17.91■□□□□ 0.46
CTCFP49711 RN7SL713P-201ENST00000582127 302 ntBASIC17.91■□□□□ 0.46
CTCFP49711 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
CTCFP49711 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC17.91■□□□□ 0.46
CTCFP49711 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
CTCFP49711 AC242376.2-201ENST00000619355 883 ntBASIC17.91■□□□□ 0.46
CTCFP49711 CDK7-214ENST00000626796 358 ntTSL 5 BASIC17.91■□□□□ 0.46
CTCFP49711 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC17.91■□□□□ 0.46
CTCFP49711 AC004923.1-202ENST00000642106 209 ntBASIC17.91■□□□□ 0.46
CTCFP49711 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CTCFP49711 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC17.91■□□□□ 0.46
CTCFP49711 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC17.91■□□□□ 0.46
CTCFP49711 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
CTCFP49711 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CTCFP49711 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CTCFP49711 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CTCFP49711 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CTCFP49711 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CTCFP49711 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
CTCFP49711 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC17.91■□□□□ 0.46
CTCFP49711 U82695.1-201ENST00000635752 1889 ntBASIC17.9■□□□□ 0.46
CTCFP49711 AGGF1P2-201ENST00000426656 2106 ntBASIC17.9■□□□□ 0.46
CTCFP49711 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CTCFP49711 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC17.9■□□□□ 0.46
CTCFP49711 TBC1D3J-201ENST00000620719 1426 ntBASIC17.9■□□□□ 0.46
CTCFP49711 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.9■□□□□ 0.46
CTCFP49711 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CTCFP49711 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC17.9■□□□□ 0.46
CTCFP49711 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.9■□□□□ 0.46
CTCFP49711 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CTCFP49711 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CTCFP49711 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CTCFP49711 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
CTCFP49711 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CTCFP49711 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC17.9■□□□□ 0.46
CTCFP49711 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CTCFP49711 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CTCFP49711 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CTCFP49711 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
CTCFP49711 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC17.9■□□□□ 0.46
CTCFP49711 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC17.9■□□□□ 0.46
CTCFP49711 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC17.9■□□□□ 0.46
CTCFP49711 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC17.9■□□□□ 0.46
CTCFP49711 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC17.9■□□□□ 0.46
CTCFP49711 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC17.9■□□□□ 0.46
CTCFP49711 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC17.9■□□□□ 0.46
CTCFP49711 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
CTCFP49711 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC17.9■□□□□ 0.46
CTCFP49711 PRSS30P-206ENST00000641773 873 ntBASIC17.9■□□□□ 0.46
CTCFP49711 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CTCFP49711 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CTCFP49711 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CTCFP49711 AC007787.1-201ENST00000588095 1583 ntBASIC17.9■□□□□ 0.46
CTCFP49711 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.9■□□□□ 0.46
CTCFP49711 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
CTCFP49711 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.9■□□□□ 0.46
CTCFP49711 AC068418.2-201ENST00000577309 3703 ntBASIC17.9■□□□□ 0.46
CTCFP49711 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
CTCFP49711 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CTCFP49711 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.9■□□□□ 0.46
CTCFP49711 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CTCFP49711 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CTCFP49711 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CTCFP49711 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CTCFP49711 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CTCFP49711 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CTCFP49711 PCDH8P1-201ENST00000428983 2773 ntBASIC17.9■□□□□ 0.46
CTCFP49711 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.46
CTCFP49711 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
CTCFP49711 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC17.89■□□□□ 0.46
CTCFP49711 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CTCFP49711 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
CTCFP49711 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
CTCFP49711 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
CTCFP49711 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CTCFP49711 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC17.89■□□□□ 0.45
CTCFP49711 AL121723.1-201ENST00000445194 1519 ntBASIC17.89■□□□□ 0.45
CTCFP49711 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.89■□□□□ 0.45
CTCFP49711 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CTCFP49711 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.89■□□□□ 0.45
CTCFP49711 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17.89■□□□□ 0.45
CTCFP49711 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.89■□□□□ 0.45
CTCFP49711 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CTCFP49711 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
CTCFP49711 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms