Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LHX1P48742 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
LHX1P48742 ORC6-206ENST00000568364 888 ntTSL 5 BASIC16.41■□□□□ 0.22
LHX1P48742 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
LHX1P48742 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
LHX1P48742 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC16.41■□□□□ 0.22
LHX1P48742 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
LHX1P48742 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LHX1P48742 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
LHX1P48742 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LHX1P48742 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
LHX1P48742 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC16.41■□□□□ 0.22
LHX1P48742 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC16.41■□□□□ 0.22
LHX1P48742 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC16.41■□□□□ 0.22
LHX1P48742 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
LHX1P48742 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
LHX1P48742 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LHX1P48742 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LHX1P48742 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LHX1P48742 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LHX1P48742 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LHX1P48742 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
LHX1P48742 AC007950.2-201ENST00000615045 2347 ntBASIC16.4■□□□□ 0.22
LHX1P48742 AC007787.1-201ENST00000588095 1583 ntBASIC16.4■□□□□ 0.22
LHX1P48742 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC16.4■□□□□ 0.22
LHX1P48742 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LHX1P48742 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC16.4■□□□□ 0.22
LHX1P48742 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
LHX1P48742 PGF-202ENST00000405431 666 ntTSL 5 BASIC16.4■□□□□ 0.22
LHX1P48742 RPL28-203ENST00000428193 573 ntTSL 2 BASIC16.4■□□□□ 0.22
LHX1P48742 RPL28-204ENST00000431533 590 ntTSL 2 BASIC16.4■□□□□ 0.22
LHX1P48742 AC234783.1-201ENST00000441761 496 ntBASIC16.4■□□□□ 0.22
LHX1P48742 AC114812.1-204ENST00000449669 728 ntBASIC16.4■□□□□ 0.22
LHX1P48742 HILS1-202ENST00000545329 423 ntBASIC16.4■□□□□ 0.22
LHX1P48742 RPL28-207ENST00000558815 616 ntTSL 2 BASIC16.4■□□□□ 0.22
LHX1P48742 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC16.4■□□□□ 0.22
LHX1P48742 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LHX1P48742 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC16.4■□□□□ 0.22
LHX1P48742 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LHX1P48742 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LHX1P48742 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC16.4■□□□□ 0.22
LHX1P48742 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LHX1P48742 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
LHX1P48742 TP73-213ENST00000604479 1623 ntTSL 5 BASIC16.4■□□□□ 0.22
LHX1P48742 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC16.4■□□□□ 0.22
LHX1P48742 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LHX1P48742 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
LHX1P48742 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LHX1P48742 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.4■□□□□ 0.22
LHX1P48742 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.4■□□□□ 0.22
LHX1P48742 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LHX1P48742 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC16.4■□□□□ 0.22
LHX1P48742 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
LHX1P48742 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC16.4■□□□□ 0.22
LHX1P48742 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LHX1P48742 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
LHX1P48742 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
LHX1P48742 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC16.39■□□□□ 0.22
LHX1P48742 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LHX1P48742 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC16.39■□□□□ 0.21
LHX1P48742 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC16.39■□□□□ 0.21
LHX1P48742 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LHX1P48742 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
LHX1P48742 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LHX1P48742 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LHX1P48742 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
LHX1P48742 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LHX1P48742 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
LHX1P48742 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC16.39■□□□□ 0.21
LHX1P48742 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC16.39■□□□□ 0.21
LHX1P48742 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
LHX1P48742 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
LHX1P48742 BCRP2-202ENST00000447763 634 ntBASIC16.39■□□□□ 0.21
LHX1P48742 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
LHX1P48742 BCRP6-201ENST00000510112 632 ntBASIC16.39■□□□□ 0.21
LHX1P48742 BCRP7-201ENST00000511549 544 ntBASIC16.39■□□□□ 0.21
LHX1P48742 IGHV3-71-201ENST00000523324 359 ntBASIC16.39■□□□□ 0.21
LHX1P48742 NOP2-220ENST00000545915 630 ntTSL 2 BASIC16.39■□□□□ 0.21
LHX1P48742 SAMD11P1-201ENST00000571429 661 ntBASIC16.39■□□□□ 0.21
LHX1P48742 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC16.39■□□□□ 0.21
LHX1P48742 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC16.39■□□□□ 0.21
LHX1P48742 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LHX1P48742 AL512343.1-201ENST00000605837 169 ntBASIC16.39■□□□□ 0.21
LHX1P48742 AC017083.2-201ENST00000608069 979 ntBASIC16.39■□□□□ 0.21
LHX1P48742 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
LHX1P48742 PRSS30P-206ENST00000641773 873 ntBASIC16.39■□□□□ 0.21
LHX1P48742 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
LHX1P48742 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LHX1P48742 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LHX1P48742 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LHX1P48742 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
LHX1P48742 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LHX1P48742 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC16.39■□□□□ 0.21
LHX1P48742 FER1L4-210ENST00000615531 5998 ntBASIC16.39■□□□□ 0.21
LHX1P48742 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LHX1P48742 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC16.38■□□□□ 0.21
LHX1P48742 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LHX1P48742 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC16.38■□□□□ 0.21
LHX1P48742 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LHX1P48742 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms