Protein–RNA interactions for Protein: P46100

ATRX, Transcriptional regulator ATRX, humanhuman

Predictions only

Length 2,492 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATRXP46100 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
ATRXP46100 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
ATRXP46100 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
ATRXP46100 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ATRXP46100 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
ATRXP46100 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC14.04□□□□□ -0.16
ATRXP46100 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
ATRXP46100 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
ATRXP46100 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
ATRXP46100 HIST1H2AE-201ENST00000303910 509 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
ATRXP46100 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC14.04□□□□□ -0.16
ATRXP46100 BCL2L12P1-201ENST00000508390 733 ntBASIC14.04□□□□□ -0.16
ATRXP46100 AL513165.2-203ENST00000537239 717 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
ATRXP46100 AC103988.2-201ENST00000561804 725 ntBASIC14.04□□□□□ -0.16
ATRXP46100 MIR4640-201ENST00000581824 90 ntBASIC14.04□□□□□ -0.16
ATRXP46100 BNIP3P13-201ENST00000599968 566 ntBASIC14.04□□□□□ -0.16
ATRXP46100 AC011462.4-201ENST00000616866 449 ntBASIC14.04□□□□□ -0.16
ATRXP46100 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ATRXP46100 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC14.04□□□□□ -0.16
ATRXP46100 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ATRXP46100 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
ATRXP46100 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC14.04□□□□□ -0.16
ATRXP46100 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
ATRXP46100 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
ATRXP46100 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
ATRXP46100 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ATRXP46100 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
ATRXP46100 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ATRXP46100 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
ATRXP46100 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
ATRXP46100 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC14.03□□□□□ -0.16
ATRXP46100 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ATRXP46100 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
ATRXP46100 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
ATRXP46100 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC14.03□□□□□ -0.16
ATRXP46100 AC004895.1-203ENST00000428901 540 ntTSL 4 BASIC14.03□□□□□ -0.16
ATRXP46100 JAZF1-AS1-201ENST00000436758 548 ntTSL 2 BASIC14.03□□□□□ -0.16
ATRXP46100 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC14.03□□□□□ -0.16
ATRXP46100 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC14.03□□□□□ -0.16
ATRXP46100 TRAPPC2L-212ENST00000567312 499 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
ATRXP46100 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC14.03□□□□□ -0.16
ATRXP46100 AC007718.1-201ENST00000621078 280 ntBASIC14.03□□□□□ -0.16
ATRXP46100 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ATRXP46100 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC14.03□□□□□ -0.16
ATRXP46100 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ATRXP46100 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC14.03□□□□□ -0.16
ATRXP46100 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
ATRXP46100 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ATRXP46100 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
ATRXP46100 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
ATRXP46100 TBC1D3J-201ENST00000620719 1426 ntBASIC14.03□□□□□ -0.16
ATRXP46100 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ATRXP46100 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ATRXP46100 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC14.03□□□□□ -0.16
ATRXP46100 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
ATRXP46100 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
ATRXP46100 AC148477.4-201ENST00000613430 1793 ntBASIC14.03□□□□□ -0.16
ATRXP46100 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ATRXP46100 NPPA-201ENST00000376476 728 ntTSL 3 BASIC14.03□□□□□ -0.16
ATRXP46100 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
ATRXP46100 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC14.03□□□□□ -0.16
ATRXP46100 LINC01885-201ENST00000414300 609 ntTSL 4 BASIC14.03□□□□□ -0.16
ATRXP46100 LYPLA2P1-203ENST00000447689 696 ntBASIC14.03□□□□□ -0.16
ATRXP46100 AL391280.1-201ENST00000506969 1062 ntBASIC14.03□□□□□ -0.16
ATRXP46100 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC14.03□□□□□ -0.16
ATRXP46100 AC093752.3-201ENST00000567343 901 ntBASIC14.03□□□□□ -0.16
ATRXP46100 AC005746.2-201ENST00000585765 470 ntTSL 5 BASIC14.03□□□□□ -0.16
ATRXP46100 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
ATRXP46100 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
ATRXP46100 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ATRXP46100 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC14.03□□□□□ -0.16
ATRXP46100 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
ATRXP46100 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ATRXP46100 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC14.02□□□□□ -0.16
ATRXP46100 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.16
ATRXP46100 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
ATRXP46100 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ATRXP46100 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.16
ATRXP46100 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC14.02□□□□□ -0.16
ATRXP46100 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
ATRXP46100 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
ATRXP46100 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
ATRXP46100 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC14.02□□□□□ -0.16
ATRXP46100 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ATRXP46100 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ATRXP46100 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ATRXP46100 DKKL1P1-201ENST00000400550 698 ntBASIC14.02□□□□□ -0.16
ATRXP46100 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
ATRXP46100 AL136309.1-201ENST00000403917 691 ntBASIC14.02□□□□□ -0.16
ATRXP46100 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
ATRXP46100 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC14.02□□□□□ -0.16
ATRXP46100 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
ATRXP46100 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC14.02□□□□□ -0.16
ATRXP46100 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
ATRXP46100 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC14.02□□□□□ -0.16
ATRXP46100 AC073911.3-201ENST00000624401 631 ntBASIC14.02□□□□□ -0.16
ATRXP46100 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC14.02□□□□□ -0.16
ATRXP46100 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC14.02□□□□□ -0.16
ATRXP46100 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ATRXP46100 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms