Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC18.34■□□□□ 0.53
BRCA1P38398 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
BRCA1P38398 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
BRCA1P38398 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
BRCA1P38398 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
BRCA1P38398 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
BRCA1P38398 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
BRCA1P38398 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
BRCA1P38398 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
BRCA1P38398 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
BRCA1P38398 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
BRCA1P38398 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC18.34■□□□□ 0.53
BRCA1P38398 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
BRCA1P38398 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC18.34■□□□□ 0.53
BRCA1P38398 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC18.34■□□□□ 0.53
BRCA1P38398 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC18.34■□□□□ 0.53
BRCA1P38398 DGAT2L7P-201ENST00000602462 744 ntBASIC18.34■□□□□ 0.53
BRCA1P38398 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC18.34■□□□□ 0.53
BRCA1P38398 AP001527.2-201ENST00000614441 631 ntBASIC18.34■□□□□ 0.53
BRCA1P38398 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
BRCA1P38398 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC18.34■□□□□ 0.53
BRCA1P38398 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
BRCA1P38398 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC18.34■□□□□ 0.53
BRCA1P38398 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
BRCA1P38398 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
BRCA1P38398 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
BRCA1P38398 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
BRCA1P38398 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
BRCA1P38398 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC18.33■□□□□ 0.53
BRCA1P38398 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
BRCA1P38398 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
BRCA1P38398 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
BRCA1P38398 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
BRCA1P38398 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
BRCA1P38398 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC18.33■□□□□ 0.53
BRCA1P38398 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
BRCA1P38398 RPL5P21-201ENST00000404620 815 ntBASIC18.33■□□□□ 0.53
BRCA1P38398 HCG27-204ENST00000424675 895 ntTSL 3 BASIC18.33■□□□□ 0.53
BRCA1P38398 XBP1P1-201ENST00000436573 652 ntBASIC18.33■□□□□ 0.53
BRCA1P38398 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC18.33■□□□□ 0.53
BRCA1P38398 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC18.33■□□□□ 0.53
BRCA1P38398 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC18.33■□□□□ 0.53
BRCA1P38398 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC18.33■□□□□ 0.53
BRCA1P38398 PLS3-210ENST00000626746 216 ntTSL 4 BASIC18.33■□□□□ 0.53
BRCA1P38398 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.33■□□□□ 0.53
BRCA1P38398 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC18.33■□□□□ 0.53
BRCA1P38398 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
BRCA1P38398 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC18.33■□□□□ 0.53
BRCA1P38398 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
BRCA1P38398 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC18.33■□□□□ 0.52
BRCA1P38398 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
BRCA1P38398 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.33■□□□□ 0.52
BRCA1P38398 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
BRCA1P38398 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
BRCA1P38398 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
BRCA1P38398 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
BRCA1P38398 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
BRCA1P38398 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
BRCA1P38398 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
BRCA1P38398 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
BRCA1P38398 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
BRCA1P38398 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC18.33■□□□□ 0.52
BRCA1P38398 MIR4472-1-201ENST00000584349 80 ntBASIC18.33■□□□□ 0.52
BRCA1P38398 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC18.33■□□□□ 0.52
BRCA1P38398 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
BRCA1P38398 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
BRCA1P38398 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
BRCA1P38398 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
BRCA1P38398 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
BRCA1P38398 ILF3-AS1-201ENST00000591501 1983 ntBASIC18.32■□□□□ 0.52
BRCA1P38398 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
BRCA1P38398 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC18.32■□□□□ 0.52
BRCA1P38398 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
BRCA1P38398 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
BRCA1P38398 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
BRCA1P38398 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC18.32■□□□□ 0.52
BRCA1P38398 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
BRCA1P38398 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
BRCA1P38398 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC18.32■□□□□ 0.52
BRCA1P38398 AC008825.2-201ENST00000603374 718 ntBASIC18.32■□□□□ 0.52
BRCA1P38398 NAMA-206ENST00000605377 509 ntTSL 5 BASIC18.32■□□□□ 0.52
BRCA1P38398 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
BRCA1P38398 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
BRCA1P38398 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
BRCA1P38398 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
BRCA1P38398 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
BRCA1P38398 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
BRCA1P38398 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
BRCA1P38398 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC18.31■□□□□ 0.52
BRCA1P38398 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
BRCA1P38398 FLJ38576-201ENST00000623820 2459 ntBASIC18.31■□□□□ 0.52
BRCA1P38398 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
BRCA1P38398 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
BRCA1P38398 TSPY25P-201ENST00000429463 745 ntBASIC18.31■□□□□ 0.52
BRCA1P38398 AL512306.1-201ENST00000432698 848 ntBASIC18.31■□□□□ 0.52
BRCA1P38398 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
BRCA1P38398 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC18.31■□□□□ 0.52
BRCA1P38398 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC18.31■□□□□ 0.52
BRCA1P38398 SIGLEC18P-201ENST00000602271 909 ntBASIC18.31■□□□□ 0.52
BRCA1P38398 LINC00431-202ENST00000636375 159 ntBASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms