Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC18.21■□□□□ 0.51
COL4A5P29400 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
COL4A5P29400 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A5P29400 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A5P29400 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A5P29400 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC18.21■□□□□ 0.51
COL4A5P29400 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC18.21■□□□□ 0.51
COL4A5P29400 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A5P29400 AC078875.1-201ENST00000431907 724 ntBASIC18.21■□□□□ 0.51
COL4A5P29400 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC18.21■□□□□ 0.51
COL4A5P29400 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC18.21■□□□□ 0.51
COL4A5P29400 CDC23-208ENST00000505120 455 ntTSL 3 BASIC18.21■□□□□ 0.51
COL4A5P29400 AC026803.1-201ENST00000569130 274 ntBASIC18.21■□□□□ 0.51
COL4A5P29400 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A5P29400 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
COL4A5P29400 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
COL4A5P29400 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC18.21■□□□□ 0.51
COL4A5P29400 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
COL4A5P29400 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC18.21■□□□□ 0.51
COL4A5P29400 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
COL4A5P29400 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
COL4A5P29400 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
COL4A5P29400 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
COL4A5P29400 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC18.21■□□□□ 0.5
COL4A5P29400 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A5P29400 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC18.2■□□□□ 0.5
COL4A5P29400 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A5P29400 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A5P29400 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A5P29400 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC18.2■□□□□ 0.5
COL4A5P29400 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
COL4A5P29400 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
COL4A5P29400 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A5P29400 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A5P29400 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A5P29400 NAGK-204ENST00000443872 878 ntTSL 3 BASIC18.2■□□□□ 0.5
COL4A5P29400 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC18.2■□□□□ 0.5
COL4A5P29400 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC18.2■□□□□ 0.5
COL4A5P29400 AL359258.3-201ENST00000622910 2331 ntBASIC18.2■□□□□ 0.5
COL4A5P29400 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A5P29400 AC092127.1-201ENST00000567093 3455 ntBASIC18.2■□□□□ 0.5
COL4A5P29400 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A5P29400 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A5P29400 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A5P29400 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC18.2■□□□□ 0.5
COL4A5P29400 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A5P29400 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
COL4A5P29400 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
COL4A5P29400 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A5P29400 AC074138.1-201ENST00000611182 1303 ntBASIC18.19■□□□□ 0.5
COL4A5P29400 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A5P29400 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A5P29400 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC18.19■□□□□ 0.5
COL4A5P29400 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC18.19■□□□□ 0.5
COL4A5P29400 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
COL4A5P29400 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC18.19■□□□□ 0.5
COL4A5P29400 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC18.19■□□□□ 0.5
COL4A5P29400 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A5P29400 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A5P29400 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A5P29400 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC18.19■□□□□ 0.5
COL4A5P29400 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A5P29400 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC18.19■□□□□ 0.5
COL4A5P29400 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A5P29400 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A5P29400 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A5P29400 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
COL4A5P29400 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A5P29400 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A5P29400 AL138725.1-201ENST00000407347 1314 ntBASIC18.19■□□□□ 0.5
COL4A5P29400 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC18.19■□□□□ 0.5
COL4A5P29400 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A5P29400 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
COL4A5P29400 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A5P29400 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A5P29400 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A5P29400 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
COL4A5P29400 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
COL4A5P29400 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC18.18■□□□□ 0.5
COL4A5P29400 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A5P29400 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A5P29400 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A5P29400 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC18.18■□□□□ 0.5
COL4A5P29400 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A5P29400 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC18.18■□□□□ 0.5
COL4A5P29400 AC009084.3-201ENST00000623356 437 ntBASIC18.18■□□□□ 0.5
COL4A5P29400 AC127024.7-201ENST00000625101 200 ntBASIC18.18■□□□□ 0.5
COL4A5P29400 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC18.18■□□□□ 0.5
COL4A5P29400 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A5P29400 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A5P29400 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A5P29400 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A5P29400 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A5P29400 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A5P29400 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A5P29400 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC18.18■□□□□ 0.5
COL4A5P29400 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC18.18■□□□□ 0.5
COL4A5P29400 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
COL4A5P29400 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
COL4A5P29400 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms