Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
VIMP08670 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VIMP08670 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
VIMP08670 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
VIMP08670 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VIMP08670 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VIMP08670 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC15.73■□□□□ 0.11
VIMP08670 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VIMP08670 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC15.73■□□□□ 0.11
VIMP08670 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VIMP08670 GUK1-204ENST00000366721 689 ntTSL 3 BASIC15.73■□□□□ 0.11
VIMP08670 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VIMP08670 GPX1P2-201ENST00000429271 606 ntBASIC15.73■□□□□ 0.11
VIMP08670 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VIMP08670 KRT18P21-201ENST00000515767 1272 ntBASIC15.73■□□□□ 0.11
VIMP08670 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC15.73■□□□□ 0.11
VIMP08670 AC012615.1-201ENST00000565797 1299 ntBASIC15.73■□□□□ 0.11
VIMP08670 CYB561-216ENST00000582297 897 ntTSL 3 BASIC15.73■□□□□ 0.11
VIMP08670 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VIMP08670 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VIMP08670 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VIMP08670 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC15.73■□□□□ 0.11
VIMP08670 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC15.73■□□□□ 0.11
VIMP08670 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VIMP08670 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
VIMP08670 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VIMP08670 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC15.73■□□□□ 0.11
VIMP08670 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VIMP08670 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
VIMP08670 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VIMP08670 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
VIMP08670 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
VIMP08670 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC15.72■□□□□ 0.11
VIMP08670 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC15.72■□□□□ 0.11
VIMP08670 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VIMP08670 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VIMP08670 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
VIMP08670 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VIMP08670 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VIMP08670 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
VIMP08670 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC15.72■□□□□ 0.11
VIMP08670 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VIMP08670 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VIMP08670 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC15.72■□□□□ 0.11
VIMP08670 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VIMP08670 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC15.72■□□□□ 0.11
VIMP08670 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VIMP08670 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VIMP08670 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VIMP08670 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
VIMP08670 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
VIMP08670 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC15.72■□□□□ 0.11
VIMP08670 RBM17P3-201ENST00000417687 1192 ntBASIC15.72■□□□□ 0.11
VIMP08670 PCED1CP-201ENST00000419887 785 ntBASIC15.72■□□□□ 0.11
VIMP08670 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC15.72■□□□□ 0.11
VIMP08670 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VIMP08670 KRT16P4-201ENST00000453883 522 ntBASIC15.72■□□□□ 0.11
VIMP08670 HS6ST1P1-201ENST00000481504 1234 ntBASIC15.72■□□□□ 0.11
VIMP08670 FICD-205ENST00000552758 603 ntTSL 2 BASIC15.72■□□□□ 0.11
VIMP08670 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
VIMP08670 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC15.72■□□□□ 0.11
VIMP08670 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC15.72■□□□□ 0.11
VIMP08670 MTDHP3-201ENST00000594186 672 ntBASIC15.72■□□□□ 0.11
VIMP08670 AC116407.4-201ENST00000623319 1061 ntBASIC15.72■□□□□ 0.11
VIMP08670 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC15.72■□□□□ 0.11
VIMP08670 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
VIMP08670 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC15.72■□□□□ 0.11
VIMP08670 REXO1L1P-202ENST00000608646 1974 ntBASIC15.72■□□□□ 0.11
VIMP08670 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
VIMP08670 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VIMP08670 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VIMP08670 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
VIMP08670 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VIMP08670 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VIMP08670 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VIMP08670 WASH3P-207ENST00000560956 1394 ntBASIC15.72■□□□□ 0.11
VIMP08670 FO538757.1-201ENST00000623083 1397 ntBASIC15.72■□□□□ 0.11
VIMP08670 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VIMP08670 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC15.72■□□□□ 0.11
VIMP08670 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VIMP08670 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC15.72■□□□□ 0.11
VIMP08670 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VIMP08670 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VIMP08670 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC15.71■□□□□ 0.11
VIMP08670 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VIMP08670 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VIMP08670 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VIMP08670 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VIMP08670 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
VIMP08670 MTHFR-210ENST00000641407 2387 ntBASIC15.71■□□□□ 0.11
VIMP08670 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
VIMP08670 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC15.71■□□□□ 0.11
VIMP08670 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC15.71■□□□□ 0.11
VIMP08670 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
VIMP08670 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VIMP08670 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
VIMP08670 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
VIMP08670 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
VIMP08670 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
VIMP08670 RAC2-202ENST00000401529 569 ntTSL 4 BASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms