Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DOAP06340 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HLA-DOAP06340 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC18.25■□□□□ 0.51
HLA-DOAP06340 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC18.25■□□□□ 0.51
HLA-DOAP06340 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
HLA-DOAP06340 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC18.24■□□□□ 0.51
HLA-DOAP06340 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DOAP06340 ING5-213ENST00000636051 4199 ntTSL 5 BASIC18.24■□□□□ 0.51
HLA-DOAP06340 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DOAP06340 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DOAP06340 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DOAP06340 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC18.24■□□□□ 0.51
HLA-DOAP06340 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC18.24■□□□□ 0.51
HLA-DOAP06340 LOX-206ENST00000639739 1626 ntTSL 5 BASIC18.24■□□□□ 0.51
HLA-DOAP06340 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DOAP06340 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC18.24■□□□□ 0.51
HLA-DOAP06340 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
HLA-DOAP06340 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DOAP06340 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DOAP06340 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DOAP06340 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DOAP06340 RPS15-201ENST00000233609 534 ntTSL 2 BASIC18.24■□□□□ 0.51
HLA-DOAP06340 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DOAP06340 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DOAP06340 AC006001.1-201ENST00000325130 474 ntBASIC18.24■□□□□ 0.51
HLA-DOAP06340 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DOAP06340 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DOAP06340 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
HLA-DOAP06340 TPO-206ENST00000382269 1155 ntTSL 5 BASIC18.24■□□□□ 0.51
HLA-DOAP06340 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
HLA-DOAP06340 MIR1908-201ENST00000410394 80 ntBASIC18.24■□□□□ 0.51
HLA-DOAP06340 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC18.24■□□□□ 0.51
HLA-DOAP06340 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
HLA-DOAP06340 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC18.24■□□□□ 0.51
HLA-DOAP06340 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC18.24■□□□□ 0.51
HLA-DOAP06340 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
HLA-DOAP06340 AC078819.1-201ENST00000547454 765 ntBASIC18.24■□□□□ 0.51
HLA-DOAP06340 AC012085.1-201ENST00000548270 765 ntBASIC18.24■□□□□ 0.51
HLA-DOAP06340 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
HLA-DOAP06340 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC18.24■□□□□ 0.51
HLA-DOAP06340 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC18.24■□□□□ 0.51
HLA-DOAP06340 MIR4525-201ENST00000580000 75 ntBASIC18.24■□□□□ 0.51
HLA-DOAP06340 RPS15-205ENST00000586686 562 ntTSL 5 BASIC18.24■□□□□ 0.51
HLA-DOAP06340 RPS15-208ENST00000591804 711 ntTSL 5 BASIC18.24■□□□□ 0.51
HLA-DOAP06340 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DOAP06340 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC18.24■□□□□ 0.51
HLA-DOAP06340 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC18.24■□□□□ 0.51
HLA-DOAP06340 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC18.24■□□□□ 0.51
HLA-DOAP06340 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
HLA-DOAP06340 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DOAP06340 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DOAP06340 AC092127.1-201ENST00000567093 3455 ntBASIC18.24■□□□□ 0.51
HLA-DOAP06340 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC18.24■□□□□ 0.51
HLA-DOAP06340 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DOAP06340 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DOAP06340 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
HLA-DOAP06340 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC18.24■□□□□ 0.51
HLA-DOAP06340 AC068587.6-202ENST00000641839 5619 ntBASIC18.24■□□□□ 0.51
HLA-DOAP06340 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
HLA-DOAP06340 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DOAP06340 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC18.24■□□□□ 0.51
HLA-DOAP06340 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC18.24■□□□□ 0.51
HLA-DOAP06340 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DOAP06340 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DOAP06340 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HLA-DOAP06340 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DOAP06340 LRRC59-203ENST00000576448 1531 ntBASIC18.23■□□□□ 0.51
HLA-DOAP06340 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC18.23■□□□□ 0.51
HLA-DOAP06340 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC18.23■□□□□ 0.51
HLA-DOAP06340 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DOAP06340 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DOAP06340 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DOAP06340 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DOAP06340 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DOAP06340 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DOAP06340 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC18.23■□□□□ 0.51
HLA-DOAP06340 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC18.23■□□□□ 0.51
HLA-DOAP06340 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC18.23■□□□□ 0.51
HLA-DOAP06340 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DOAP06340 AC007787.1-201ENST00000588095 1583 ntBASIC18.23■□□□□ 0.51
HLA-DOAP06340 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DOAP06340 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
HLA-DOAP06340 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DOAP06340 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC18.23■□□□□ 0.51
HLA-DOAP06340 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC18.23■□□□□ 0.51
HLA-DOAP06340 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC18.23■□□□□ 0.51
HLA-DOAP06340 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DOAP06340 PACS1-203ENST00000524815 628 ntTSL 4 BASIC18.23■□□□□ 0.51
HLA-DOAP06340 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DOAP06340 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DOAP06340 DUX4L45-201ENST00000566406 1057 ntBASIC18.23■□□□□ 0.51
HLA-DOAP06340 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC18.23■□□□□ 0.51
HLA-DOAP06340 MIR4538-201ENST00000581377 78 ntBASIC18.23■□□□□ 0.51
HLA-DOAP06340 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DOAP06340 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC18.23■□□□□ 0.51
HLA-DOAP06340 AL645728.2-202ENST00000641679 227 ntBASIC18.23■□□□□ 0.51
HLA-DOAP06340 PRSS30P-206ENST00000641773 873 ntBASIC18.23■□□□□ 0.51
HLA-DOAP06340 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DOAP06340 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DOAP06340 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms