Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC9.41□□□□□ -0.9
APOBP04114 AL627422.1-201ENST00000434104 580 ntBASIC9.41□□□□□ -0.9
APOBP04114 FTLP5-201ENST00000586853 534 ntBASIC9.41□□□□□ -0.9
APOBP04114 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC9.41□□□□□ -0.9
APOBP04114 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC9.41□□□□□ -0.9
APOBP04114 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC9.41□□□□□ -0.9
APOBP04114 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
APOBP04114 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
APOBP04114 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC9.41□□□□□ -0.9
APOBP04114 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
APOBP04114 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC9.41□□□□□ -0.9
APOBP04114 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC9.41□□□□□ -0.9
APOBP04114 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
APOBP04114 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
APOBP04114 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
APOBP04114 AL583805.1-201ENST00000391389 531 ntBASIC9.41□□□□□ -0.9
APOBP04114 AC093826.1-201ENST00000508655 993 ntBASIC9.41□□□□□ -0.9
APOBP04114 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC9.41□□□□□ -0.9
APOBP04114 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC9.41□□□□□ -0.9
APOBP04114 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
APOBP04114 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC9.41□□□□□ -0.9
APOBP04114 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC9.41□□□□□ -0.9
APOBP04114 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
APOBP04114 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC9.4□□□□□ -0.9
APOBP04114 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
APOBP04114 RN7SKP109-201ENST00000410592 316 ntBASIC9.4□□□□□ -0.9
APOBP04114 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
APOBP04114 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC9.4□□□□□ -0.9
APOBP04114 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC9.4□□□□□ -0.9
APOBP04114 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC9.4□□□□□ -0.9
APOBP04114 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC9.4□□□□□ -0.9
APOBP04114 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC9.4□□□□□ -0.9
APOBP04114 AC133540.1-201ENST00000620845 1019 ntBASIC9.4□□□□□ -0.9
APOBP04114 AC009145.4-201ENST00000625119 1294 ntBASIC9.4□□□□□ -0.9
APOBP04114 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
APOBP04114 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
APOBP04114 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC9.4□□□□□ -0.9
APOBP04114 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
APOBP04114 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC9.4□□□□□ -0.9
APOBP04114 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC9.4□□□□□ -0.9
APOBP04114 AL139384.1-201ENST00000612143 3047 ntBASIC9.4□□□□□ -0.9
APOBP04114 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC9.4□□□□□ -0.9
APOBP04114 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC9.4□□□□□ -0.9
APOBP04114 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
APOBP04114 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
APOBP04114 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
APOBP04114 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC9.4□□□□□ -0.9
APOBP04114 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
APOBP04114 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
APOBP04114 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
APOBP04114 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
APOBP04114 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC9.4□□□□□ -0.9
APOBP04114 FAM192A-218ENST00000567439 1086 ntAPPRIS P1 TSL 2 BASIC9.4□□□□□ -0.9
APOBP04114 THY1-209ENST00000580275 578 ntTSL 3 BASIC9.4□□□□□ -0.9
APOBP04114 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC9.4□□□□□ -0.9
APOBP04114 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
APOBP04114 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
APOBP04114 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC9.4□□□□□ -0.9
APOBP04114 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC9.4□□□□□ -0.9
APOBP04114 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
APOBP04114 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC9.4□□□□□ -0.9
APOBP04114 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
APOBP04114 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC9.4□□□□□ -0.9
APOBP04114 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
APOBP04114 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
APOBP04114 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
APOBP04114 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC9.4□□□□□ -0.9
APOBP04114 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC9.4□□□□□ -0.91
APOBP04114 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC9.4□□□□□ -0.91
APOBP04114 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC9.4□□□□□ -0.91
APOBP04114 NCR3-202ENST00000376071 541 ntTSL 5 BASIC9.4□□□□□ -0.91
APOBP04114 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC9.4□□□□□ -0.91
APOBP04114 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC9.4□□□□□ -0.91
APOBP04114 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC9.4□□□□□ -0.91
APOBP04114 AC006548.2-201ENST00000605217 529 ntBASIC9.4□□□□□ -0.91
APOBP04114 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC9.4□□□□□ -0.91
APOBP04114 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC9.4□□□□□ -0.91
APOBP04114 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.91
APOBP04114 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC9.4□□□□□ -0.91
APOBP04114 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC9.4□□□□□ -0.91
APOBP04114 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.91
APOBP04114 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC9.4□□□□□ -0.91
APOBP04114 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC9.4□□□□□ -0.91
APOBP04114 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC9.4□□□□□ -0.91
APOBP04114 REXO1L2P-201ENST00000425429 2069 ntBASIC9.4□□□□□ -0.91
APOBP04114 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.91
APOBP04114 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC9.4□□□□□ -0.91
APOBP04114 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC9.4□□□□□ -0.91
APOBP04114 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC9.4□□□□□ -0.91
APOBP04114 AC069224.1-201ENST00000566372 1715 ntBASIC9.4□□□□□ -0.91
APOBP04114 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC9.4□□□□□ -0.91
APOBP04114 PCDH8P1-201ENST00000428983 2773 ntBASIC9.39□□□□□ -0.91
APOBP04114 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC9.39□□□□□ -0.91
APOBP04114 POU5F1P2-201ENST00000521750 823 ntBASIC9.39□□□□□ -0.91
APOBP04114 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
APOBP04114 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC9.39□□□□□ -0.91
APOBP04114 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
APOBP04114 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
APOBP04114 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC9.39□□□□□ -0.91
APOBP04114 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC9.39□□□□□ -0.91
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms