Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 GNRHR2-203ENST00000581100 1187 ntBASIC13.12□□□□□ -0.31
ABCA1O95477 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC13.12□□□□□ -0.31
ABCA1O95477 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC13.12□□□□□ -0.31
ABCA1O95477 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
ABCA1O95477 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC13.12□□□□□ -0.31
ABCA1O95477 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
ABCA1O95477 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC13.12□□□□□ -0.31
ABCA1O95477 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
ABCA1O95477 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC13.12□□□□□ -0.31
ABCA1O95477 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
ABCA1O95477 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
ABCA1O95477 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC13.12□□□□□ -0.31
ABCA1O95477 ME2P1-201ENST00000426028 1970 ntBASIC13.12□□□□□ -0.31
ABCA1O95477 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
ABCA1O95477 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC13.12□□□□□ -0.31
ABCA1O95477 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC13.12□□□□□ -0.31
ABCA1O95477 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC13.12□□□□□ -0.31
ABCA1O95477 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
ABCA1O95477 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
ABCA1O95477 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC13.12□□□□□ -0.31
ABCA1O95477 ST20-AS1-201ENST00000560255 4223 ntBASIC13.12□□□□□ -0.31
ABCA1O95477 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
ABCA1O95477 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
ABCA1O95477 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
ABCA1O95477 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC13.12□□□□□ -0.31
ABCA1O95477 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
ABCA1O95477 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
ABCA1O95477 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC13.12□□□□□ -0.31
ABCA1O95477 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC13.12□□□□□ -0.31
ABCA1O95477 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC13.12□□□□□ -0.31
ABCA1O95477 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA1O95477 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA1O95477 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA1O95477 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA1O95477 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA1O95477 MPV17-206ENST00000402722 827 ntTSL 3 BASIC13.11□□□□□ -0.31
ABCA1O95477 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC13.11□□□□□ -0.31
ABCA1O95477 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC13.11□□□□□ -0.31
ABCA1O95477 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC13.11□□□□□ -0.31
ABCA1O95477 EEF1DP4-201ENST00000446006 880 ntBASIC13.11□□□□□ -0.31
ABCA1O95477 AC007551.1-201ENST00000457394 519 ntBASIC13.11□□□□□ -0.31
ABCA1O95477 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC13.11□□□□□ -0.31
ABCA1O95477 RNA5SP423-201ENST00000517127 109 ntBASIC13.11□□□□□ -0.31
ABCA1O95477 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC13.11□□□□□ -0.31
ABCA1O95477 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
ABCA1O95477 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC13.11□□□□□ -0.31
ABCA1O95477 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA1O95477 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC13.11□□□□□ -0.31
ABCA1O95477 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC13.11□□□□□ -0.31
ABCA1O95477 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
ABCA1O95477 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA1O95477 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA1O95477 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC13.11□□□□□ -0.31
ABCA1O95477 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA1O95477 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA1O95477 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA1O95477 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC13.11□□□□□ -0.31
ABCA1O95477 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
ABCA1O95477 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA1O95477 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA1O95477 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC13.11□□□□□ -0.31
ABCA1O95477 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA1O95477 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA1O95477 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC13.11□□□□□ -0.31
ABCA1O95477 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA1O95477 TPO-206ENST00000382269 1155 ntTSL 5 BASIC13.11□□□□□ -0.31
ABCA1O95477 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA1O95477 AC022137.2-201ENST00000503482 481 ntBASIC13.11□□□□□ -0.31
ABCA1O95477 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC13.11□□□□□ -0.31
ABCA1O95477 C2orf69P2-201ENST00000562032 1123 ntBASIC13.11□□□□□ -0.31
ABCA1O95477 MIR3615-201ENST00000581999 87 ntBASIC13.11□□□□□ -0.31
ABCA1O95477 AFF1-201ENST00000307808 9390 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA1O95477 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC13.11□□□□□ -0.31
ABCA1O95477 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
ABCA1O95477 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA1O95477 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA1O95477 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA1O95477 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA1O95477 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA1O95477 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC13.11□□□□□ -0.31
ABCA1O95477 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC13.11□□□□□ -0.31
ABCA1O95477 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA1O95477 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC13.11□□□□□ -0.31
ABCA1O95477 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
ABCA1O95477 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC13.11□□□□□ -0.31
ABCA1O95477 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
ABCA1O95477 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
ABCA1O95477 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
ABCA1O95477 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
ABCA1O95477 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
ABCA1O95477 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC13.1□□□□□ -0.31
ABCA1O95477 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
ABCA1O95477 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC13.1□□□□□ -0.31
ABCA1O95477 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
ABCA1O95477 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
ABCA1O95477 RPL28-203ENST00000428193 573 ntTSL 2 BASIC13.1□□□□□ -0.31
ABCA1O95477 ACTG1P3-201ENST00000431775 1114 ntBASIC13.1□□□□□ -0.31
ABCA1O95477 IGHJ2P-201ENST00000454480 60 ntBASIC13.1□□□□□ -0.31
ABCA1O95477 PFN1P12-201ENST00000455938 534 ntBASIC13.1□□□□□ -0.31
ABCA1O95477 FXR1-221ENST00000491674 365 ntTSL 2 BASIC13.1□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms