Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MBD4O95243 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC18.49■□□□□ 0.55
MBD4O95243 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC18.49■□□□□ 0.55
MBD4O95243 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
MBD4O95243 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MBD4O95243 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MBD4O95243 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MBD4O95243 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MBD4O95243 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
MBD4O95243 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MBD4O95243 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MBD4O95243 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC18.48■□□□□ 0.55
MBD4O95243 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MBD4O95243 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
MBD4O95243 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
MBD4O95243 GSN-206ENST00000394353 2311 ntTSL 2 BASIC18.48■□□□□ 0.55
MBD4O95243 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC18.48■□□□□ 0.55
MBD4O95243 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MBD4O95243 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC18.48■□□□□ 0.55
MBD4O95243 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
MBD4O95243 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
MBD4O95243 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC18.48■□□□□ 0.55
MBD4O95243 BRF1-202ENST00000379932 884 ntTSL 5 BASIC18.48■□□□□ 0.55
MBD4O95243 BAATP1-201ENST00000412284 1225 ntBASIC18.48■□□□□ 0.55
MBD4O95243 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
MBD4O95243 BCRP2-202ENST00000447763 634 ntBASIC18.48■□□□□ 0.55
MBD4O95243 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC18.48■□□□□ 0.55
MBD4O95243 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
MBD4O95243 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC18.48■□□□□ 0.55
MBD4O95243 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC18.48■□□□□ 0.55
MBD4O95243 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC18.48■□□□□ 0.55
MBD4O95243 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
MBD4O95243 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC18.48■□□□□ 0.55
MBD4O95243 BCRP6-201ENST00000510112 632 ntBASIC18.48■□□□□ 0.55
MBD4O95243 BCRP7-201ENST00000511549 544 ntBASIC18.48■□□□□ 0.55
MBD4O95243 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC18.48■□□□□ 0.55
MBD4O95243 RAB43P1-201ENST00000561790 589 ntBASIC18.48■□□□□ 0.55
MBD4O95243 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC18.48■□□□□ 0.55
MBD4O95243 AC106886.1-201ENST00000568660 600 ntBASIC18.48■□□□□ 0.55
MBD4O95243 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
MBD4O95243 BX539320.1-201ENST00000623759 877 ntBASIC18.48■□□□□ 0.55
MBD4O95243 API5-202ENST00000420461 2009 ntTSL 2 BASIC18.48■□□□□ 0.55
MBD4O95243 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MBD4O95243 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MBD4O95243 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC18.48■□□□□ 0.55
MBD4O95243 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MBD4O95243 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
MBD4O95243 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
MBD4O95243 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC18.48■□□□□ 0.55
MBD4O95243 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
MBD4O95243 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
MBD4O95243 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
MBD4O95243 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC18.48■□□□□ 0.55
MBD4O95243 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC18.47■□□□□ 0.55
MBD4O95243 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
MBD4O95243 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
MBD4O95243 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
MBD4O95243 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
MBD4O95243 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MBD4O95243 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC18.47■□□□□ 0.55
MBD4O95243 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
MBD4O95243 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
MBD4O95243 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC18.47■□□□□ 0.55
MBD4O95243 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MBD4O95243 SSR4P1-203ENST00000599569 2260 ntBASIC18.47■□□□□ 0.55
MBD4O95243 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MBD4O95243 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MBD4O95243 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MBD4O95243 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
MBD4O95243 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC18.47■□□□□ 0.55
MBD4O95243 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC18.47■□□□□ 0.55
MBD4O95243 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
MBD4O95243 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MBD4O95243 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC18.47■□□□□ 0.55
MBD4O95243 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC18.47■□□□□ 0.55
MBD4O95243 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC18.47■□□□□ 0.55
MBD4O95243 HIST1H2BPS3-201ENST00000419683 341 ntBASIC18.47■□□□□ 0.55
MBD4O95243 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC18.47■□□□□ 0.55
MBD4O95243 AC012441.1-201ENST00000446669 685 ntBASIC18.47■□□□□ 0.55
MBD4O95243 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MBD4O95243 ACA64.2-201ENST00000459014 129 ntBASIC18.47■□□□□ 0.55
MBD4O95243 AC106760.1-201ENST00000508690 800 ntBASIC18.47■□□□□ 0.55
MBD4O95243 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC18.47■□□□□ 0.55
MBD4O95243 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC18.47■□□□□ 0.55
MBD4O95243 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC18.47■□□□□ 0.55
MBD4O95243 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC18.47■□□□□ 0.55
MBD4O95243 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC18.47■□□□□ 0.55
MBD4O95243 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
MBD4O95243 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
MBD4O95243 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MBD4O95243 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
MBD4O95243 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MBD4O95243 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC18.47■□□□□ 0.55
MBD4O95243 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC18.47■□□□□ 0.55
MBD4O95243 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
MBD4O95243 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
MBD4O95243 AC134312.5-201ENST00000568031 1313 ntBASIC18.47■□□□□ 0.55
MBD4O95243 AC093525.8-201ENST00000624099 1342 ntBASIC18.47■□□□□ 0.55
MBD4O95243 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
MBD4O95243 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms