Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC6.75□□□□□ -1.33
USH2AO75445 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC6.75□□□□□ -1.33
USH2AO75445 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC6.75□□□□□ -1.33
USH2AO75445 FAM9C-202ENST00000380625 1122 ntAPPRIS P2 TSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 NME4-203ENST00000397722 1232 ntTSL 2 BASIC6.75□□□□□ -1.33
USH2AO75445 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC6.75□□□□□ -1.33
USH2AO75445 AL359458.1-201ENST00000430821 400 ntTSL 3 BASIC6.75□□□□□ -1.33
USH2AO75445 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC6.75□□□□□ -1.33
USH2AO75445 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC6.75□□□□□ -1.33
USH2AO75445 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC6.75□□□□□ -1.33
USH2AO75445 MED11-202ENST00000573708 802 ntTSL 2 BASIC6.75□□□□□ -1.33
USH2AO75445 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 AC006483.2-201ENST00000609813 515 ntBASIC6.75□□□□□ -1.33
USH2AO75445 MIR6893-201ENST00000613458 69 ntBASIC6.75□□□□□ -1.33
USH2AO75445 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC6.75□□□□□ -1.33
USH2AO75445 AC008536.3-201ENST00000623282 1599 ntBASIC6.75□□□□□ -1.33
USH2AO75445 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC6.75□□□□□ -1.33
USH2AO75445 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 CTBP2P8-201ENST00000422584 1330 ntBASIC6.75□□□□□ -1.33
USH2AO75445 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC6.75□□□□□ -1.33
USH2AO75445 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC6.75□□□□□ -1.33
USH2AO75445 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC6.75□□□□□ -1.33
USH2AO75445 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 MESTP3-201ENST00000503460 968 ntBASIC6.75□□□□□ -1.33
USH2AO75445 AC113347.2-201ENST00000512350 279 ntBASIC6.75□□□□□ -1.33
USH2AO75445 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 AP006248.1-201ENST00000610471 67 ntBASIC6.75□□□□□ -1.33
USH2AO75445 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC6.75□□□□□ -1.33
USH2AO75445 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC6.75□□□□□ -1.33
USH2AO75445 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 AMT-224ENST00000635808 1610 ntTSL 5 BASIC6.75□□□□□ -1.33
USH2AO75445 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC6.75□□□□□ -1.33
USH2AO75445 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC6.75□□□□□ -1.33
USH2AO75445 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 FTX-216ENST00000638985 1367 ntTSL 5 BASIC6.75□□□□□ -1.33
USH2AO75445 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC6.75□□□□□ -1.33
USH2AO75445 LINC01144-201ENST00000626198 1710 ntBASIC6.75□□□□□ -1.33
USH2AO75445 TREM2-202ENST00000373113 1044 ntAPPRIS P3 TSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 AF274858.1-201ENST00000406288 372 ntBASIC6.75□□□□□ -1.33
USH2AO75445 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC6.75□□□□□ -1.33
USH2AO75445 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC6.75□□□□□ -1.33
USH2AO75445 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC6.75□□□□□ -1.33
USH2AO75445 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC6.75□□□□□ -1.33
USH2AO75445 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 RN7SL300P-201ENST00000582522 318 ntBASIC6.75□□□□□ -1.33
USH2AO75445 AC138466.3-201ENST00000619983 221 ntBASIC6.75□□□□□ -1.33
USH2AO75445 AL157414.3-201ENST00000624276 1954 ntBASIC6.75□□□□□ -1.33
USH2AO75445 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 KRT8P14-201ENST00000414254 1442 ntBASIC6.75□□□□□ -1.33
USH2AO75445 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC6.75□□□□□ -1.33
USH2AO75445 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC6.75□□□□□ -1.33
USH2AO75445 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC6.75□□□□□ -1.33
USH2AO75445 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC6.75□□□□□ -1.33
USH2AO75445 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC6.75□□□□□ -1.33
USH2AO75445 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC6.75□□□□□ -1.33
USH2AO75445 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC6.74□□□□□ -1.33
USH2AO75445 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC6.74□□□□□ -1.33
USH2AO75445 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC6.74□□□□□ -1.33
USH2AO75445 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 FAM197Y6-201ENST00000420524 766 ntBASIC6.74□□□□□ -1.33
USH2AO75445 HIST1H2APS2-201ENST00000454426 370 ntBASIC6.74□□□□□ -1.33
USH2AO75445 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC6.74□□□□□ -1.33
USH2AO75445 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC6.74□□□□□ -1.33
USH2AO75445 AC140113.1-201ENST00000603467 169 ntBASIC6.74□□□□□ -1.33
USH2AO75445 AL160191.2-201ENST00000603975 601 ntBASIC6.74□□□□□ -1.33
USH2AO75445 MFF-204ENST00000353339 2186 ntTSL 5 BASIC6.74□□□□□ -1.33
USH2AO75445 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC6.74□□□□□ -1.33
USH2AO75445 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
USH2AO75445 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC6.74□□□□□ -1.33
USH2AO75445 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms