Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
LDB3O75112 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
LDB3O75112 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LDB3O75112 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
LDB3O75112 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
LDB3O75112 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LDB3O75112 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LDB3O75112 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LDB3O75112 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LDB3O75112 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC14.65□□□□□ -0.06
LDB3O75112 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LDB3O75112 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC14.65□□□□□ -0.06
LDB3O75112 PKD1P5-201ENST00000532415 10291 ntBASIC14.65□□□□□ -0.06
LDB3O75112 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LDB3O75112 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LDB3O75112 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LDB3O75112 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LDB3O75112 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LDB3O75112 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
LDB3O75112 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LDB3O75112 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LDB3O75112 MEP1AP4-201ENST00000423244 1087 ntBASIC14.65□□□□□ -0.06
LDB3O75112 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
LDB3O75112 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC14.65□□□□□ -0.06
LDB3O75112 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC14.65□□□□□ -0.06
LDB3O75112 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC14.65□□□□□ -0.06
LDB3O75112 AC055876.2-201ENST00000531834 546 ntBASIC14.65□□□□□ -0.06
LDB3O75112 POLD4-211ENST00000539074 714 ntTSL 3 BASIC14.65□□□□□ -0.06
LDB3O75112 CDK4-206ENST00000549606 558 ntTSL 2 BASIC14.65□□□□□ -0.06
LDB3O75112 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC14.65□□□□□ -0.06
LDB3O75112 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC14.65□□□□□ -0.06
LDB3O75112 AC036164.1-201ENST00000570544 333 ntBASIC14.65□□□□□ -0.06
LDB3O75112 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
LDB3O75112 AC138761.1-201ENST00000584393 385 ntBASIC14.65□□□□□ -0.06
LDB3O75112 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LDB3O75112 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
LDB3O75112 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC14.65□□□□□ -0.06
LDB3O75112 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LDB3O75112 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC14.65□□□□□ -0.06
LDB3O75112 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LDB3O75112 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
LDB3O75112 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LDB3O75112 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LDB3O75112 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LDB3O75112 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LDB3O75112 AC112693.3-201ENST00000624819 1983 ntBASIC14.65□□□□□ -0.06
LDB3O75112 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC14.65□□□□□ -0.06
LDB3O75112 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LDB3O75112 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC14.65□□□□□ -0.06
LDB3O75112 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LDB3O75112 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LDB3O75112 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LDB3O75112 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LDB3O75112 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC14.65□□□□□ -0.06
LDB3O75112 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LDB3O75112 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LDB3O75112 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC14.65□□□□□ -0.07
LDB3O75112 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC14.64□□□□□ -0.07
LDB3O75112 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
LDB3O75112 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LDB3O75112 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC14.64□□□□□ -0.07
LDB3O75112 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LDB3O75112 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC14.64□□□□□ -0.07
LDB3O75112 AC144831.1-201ENST00000573312 2656 ntBASIC14.64□□□□□ -0.07
LDB3O75112 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LDB3O75112 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LDB3O75112 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LDB3O75112 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LDB3O75112 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
LDB3O75112 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LDB3O75112 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC14.64□□□□□ -0.07
LDB3O75112 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LDB3O75112 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LDB3O75112 PIN1P1-201ENST00000412108 996 ntBASIC14.64□□□□□ -0.07
LDB3O75112 DFFBP1-201ENST00000433250 979 ntBASIC14.64□□□□□ -0.07
LDB3O75112 RHOA-206ENST00000454011 889 ntTSL 2 BASIC14.64□□□□□ -0.07
LDB3O75112 RN7SL399P-201ENST00000471648 279 ntBASIC14.64□□□□□ -0.07
LDB3O75112 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC14.64□□□□□ -0.07
LDB3O75112 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LDB3O75112 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC14.64□□□□□ -0.07
LDB3O75112 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC14.64□□□□□ -0.07
LDB3O75112 CHCHD2P3-201ENST00000603038 451 ntBASIC14.64□□□□□ -0.07
LDB3O75112 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC14.64□□□□□ -0.07
LDB3O75112 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC14.64□□□□□ -0.07
LDB3O75112 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LDB3O75112 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LDB3O75112 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC14.64□□□□□ -0.07
LDB3O75112 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LDB3O75112 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
LDB3O75112 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LDB3O75112 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LDB3O75112 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC14.64□□□□□ -0.07
LDB3O75112 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
LDB3O75112 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LDB3O75112 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
LDB3O75112 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LDB3O75112 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC14.64□□□□□ -0.07
LDB3O75112 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LDB3O75112 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LDB3O75112 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms