Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PDLIM1O00151 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
PDLIM1O00151 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PDLIM1O00151 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PDLIM1O00151 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
PDLIM1O00151 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
PDLIM1O00151 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PDLIM1O00151 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC14.93□□□□□ -0.02
PDLIM1O00151 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
PDLIM1O00151 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PDLIM1O00151 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
PDLIM1O00151 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PDLIM1O00151 PABPC1-208ENST00000519004 2401 ntTSL 2 BASIC14.93□□□□□ -0.02
PDLIM1O00151 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
PDLIM1O00151 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC14.93□□□□□ -0.02
PDLIM1O00151 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC14.93□□□□□ -0.02
PDLIM1O00151 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PDLIM1O00151 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
PDLIM1O00151 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC14.93□□□□□ -0.02
PDLIM1O00151 MIR940-201ENST00000401276 94 ntBASIC14.93□□□□□ -0.02
PDLIM1O00151 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC14.93□□□□□ -0.02
PDLIM1O00151 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PDLIM1O00151 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC14.93□□□□□ -0.02
PDLIM1O00151 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC14.93□□□□□ -0.02
PDLIM1O00151 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC14.93□□□□□ -0.02
PDLIM1O00151 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC14.93□□□□□ -0.02
PDLIM1O00151 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
PDLIM1O00151 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC14.93□□□□□ -0.02
PDLIM1O00151 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PDLIM1O00151 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PDLIM1O00151 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PDLIM1O00151 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
PDLIM1O00151 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PDLIM1O00151 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PDLIM1O00151 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC14.93□□□□□ -0.02
PDLIM1O00151 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC14.93□□□□□ -0.02
PDLIM1O00151 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC14.93□□□□□ -0.02
PDLIM1O00151 MROH4P-201ENST00000431302 1578 ntBASIC14.93□□□□□ -0.02
PDLIM1O00151 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PDLIM1O00151 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
PDLIM1O00151 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PDLIM1O00151 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
PDLIM1O00151 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
PDLIM1O00151 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC14.93□□□□□ -0.02
PDLIM1O00151 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PDLIM1O00151 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
PDLIM1O00151 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PDLIM1O00151 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PDLIM1O00151 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
PDLIM1O00151 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC14.93□□□□□ -0.02
PDLIM1O00151 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PDLIM1O00151 AC134407.2-201ENST00000625089 1978 ntBASIC14.93□□□□□ -0.02
PDLIM1O00151 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC14.93□□□□□ -0.02
PDLIM1O00151 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
PDLIM1O00151 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PDLIM1O00151 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
PDLIM1O00151 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
PDLIM1O00151 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC14.92□□□□□ -0.02
PDLIM1O00151 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PDLIM1O00151 AC126365.1-201ENST00000578585 1514 ntBASIC14.92□□□□□ -0.02
PDLIM1O00151 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PDLIM1O00151 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
PDLIM1O00151 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
PDLIM1O00151 RDX-218ENST00000544551 4117 ntTSL 2 BASIC14.92□□□□□ -0.02
PDLIM1O00151 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC14.92□□□□□ -0.02
PDLIM1O00151 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
PDLIM1O00151 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC14.92□□□□□ -0.02
PDLIM1O00151 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PDLIM1O00151 STRA6-202ENST00000395105 2800 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PDLIM1O00151 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PDLIM1O00151 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PDLIM1O00151 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PDLIM1O00151 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PDLIM1O00151 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC14.92□□□□□ -0.02
PDLIM1O00151 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PDLIM1O00151 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PDLIM1O00151 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC14.92□□□□□ -0.02
PDLIM1O00151 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PDLIM1O00151 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC14.92□□□□□ -0.02
PDLIM1O00151 MMP17-203ENST00000535004 719 ntTSL 3 BASIC14.92□□□□□ -0.02
PDLIM1O00151 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
PDLIM1O00151 CALM1-205ENST00000553542 877 ntTSL 5 BASIC14.92□□□□□ -0.02
PDLIM1O00151 AC040169.1-201ENST00000565382 521 ntBASIC14.92□□□□□ -0.02
PDLIM1O00151 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PDLIM1O00151 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC14.92□□□□□ -0.02
PDLIM1O00151 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC14.92□□□□□ -0.02
PDLIM1O00151 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC14.92□□□□□ -0.02
PDLIM1O00151 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
PDLIM1O00151 AC148477.4-201ENST00000613430 1793 ntBASIC14.92□□□□□ -0.02
PDLIM1O00151 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PDLIM1O00151 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PDLIM1O00151 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
PDLIM1O00151 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PDLIM1O00151 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PDLIM1O00151 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC14.92□□□□□ -0.02
PDLIM1O00151 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PDLIM1O00151 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
PDLIM1O00151 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
PDLIM1O00151 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PDLIM1O00151 AC140479.7-201ENST00000636301 2332 ntBASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms