Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 FAM8A3P-201ENST00000427218 844 ntBASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 AL591424.1-201ENST00000442569 1213 ntBASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 KRT8P23-201ENST00000560090 1207 ntBASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 AC027601.4-201ENST00000611259 610 ntBASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC15.65■□□□□ 0.1
TRIM49D1C9J1S8 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 UXT-AS1-201ENST00000590504 1525 ntBASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 AC023274.1-201ENST00000418278 595 ntBASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 SLC25A1P1-201ENST00000528351 927 ntBASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 SLC25A39P2-201ENST00000537614 270 ntBASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 COX5A-206ENST00000568783 571 ntTSL 3 BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 USP35-204ENST00000530267 2419 ntTSL 2 BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 PCDHGB8P-201ENST00000502926 1973 ntBASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TRIM49D1C9J1S8 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC15.63■□□□□ 0.09
TRIM49D1C9J1S8 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms