Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC9Q9Y3X0 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
CCDC9Q9Y3X0 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC9Q9Y3X0 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC9Q9Y3X0 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC9Q9Y3X0 DPM3-202ENST00000368399 517 ntBASIC20.55■□□□□ 0.88
CCDC9Q9Y3X0 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC9Q9Y3X0 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
CCDC9Q9Y3X0 SLC16A6P1-201ENST00000413214 1059 ntBASIC20.55■□□□□ 0.88
CCDC9Q9Y3X0 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC9Q9Y3X0 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC20.55■□□□□ 0.88
CCDC9Q9Y3X0 HIST2H2BB-201ENST00000449108 381 ntBASIC20.55■□□□□ 0.88
CCDC9Q9Y3X0 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC20.55■□□□□ 0.88
CCDC9Q9Y3X0 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC20.55■□□□□ 0.88
CCDC9Q9Y3X0 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC9Q9Y3X0 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
CCDC9Q9Y3X0 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC20.55■□□□□ 0.88
CCDC9Q9Y3X0 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC20.55■□□□□ 0.88
CCDC9Q9Y3X0 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC20.55■□□□□ 0.88
CCDC9Q9Y3X0 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC20.55■□□□□ 0.88
CCDC9Q9Y3X0 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC20.55■□□□□ 0.88
CCDC9Q9Y3X0 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC9Q9Y3X0 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC20.55■□□□□ 0.88
CCDC9Q9Y3X0 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC9Q9Y3X0 RN7SL713P-201ENST00000582127 302 ntBASIC20.55■□□□□ 0.88
CCDC9Q9Y3X0 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC20.55■□□□□ 0.88
CCDC9Q9Y3X0 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC20.55■□□□□ 0.88
CCDC9Q9Y3X0 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC9Q9Y3X0 AC012044.1-201ENST00000603431 297 ntBASIC20.55■□□□□ 0.88
CCDC9Q9Y3X0 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC9Q9Y3X0 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC9Q9Y3X0 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC9Q9Y3X0 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC9Q9Y3X0 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC9Q9Y3X0 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC9Q9Y3X0 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CCDC9Q9Y3X0 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC9Q9Y3X0 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC9Q9Y3X0 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC9Q9Y3X0 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC9Q9Y3X0 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
CCDC9Q9Y3X0 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC9Q9Y3X0 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC9Q9Y3X0 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC9Q9Y3X0 CES3-203ENST00000543856 3178 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC9Q9Y3X0 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC9Q9Y3X0 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC9Q9Y3X0 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC9Q9Y3X0 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC9Q9Y3X0 RN7SL181P-201ENST00000462921 277 ntBASIC20.54■□□□□ 0.88
CCDC9Q9Y3X0 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC20.54■□□□□ 0.88
CCDC9Q9Y3X0 AC025181.2-201ENST00000606994 802 ntBASIC20.54■□□□□ 0.88
CCDC9Q9Y3X0 AL023803.2-201ENST00000620080 638 ntBASIC20.54■□□□□ 0.88
CCDC9Q9Y3X0 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC20.54■□□□□ 0.88
CCDC9Q9Y3X0 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC20.54■□□□□ 0.88
CCDC9Q9Y3X0 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC9Q9Y3X0 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC9Q9Y3X0 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC9Q9Y3X0 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
CCDC9Q9Y3X0 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC9Q9Y3X0 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC9Q9Y3X0 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC9Q9Y3X0 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC9Q9Y3X0 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
CCDC9Q9Y3X0 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC9Q9Y3X0 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
CCDC9Q9Y3X0 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC20.53■□□□□ 0.88
CCDC9Q9Y3X0 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
CCDC9Q9Y3X0 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC20.53■□□□□ 0.88
CCDC9Q9Y3X0 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC20.53■□□□□ 0.88
CCDC9Q9Y3X0 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC9Q9Y3X0 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC20.53■□□□□ 0.88
CCDC9Q9Y3X0 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC9Q9Y3X0 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CCDC9Q9Y3X0 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC9Q9Y3X0 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC9Q9Y3X0 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC20.53■□□□□ 0.88
CCDC9Q9Y3X0 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC9Q9Y3X0 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
CCDC9Q9Y3X0 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC9Q9Y3X0 AL354877.1-201ENST00000424412 413 ntBASIC20.53■□□□□ 0.88
CCDC9Q9Y3X0 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC20.53■□□□□ 0.88
CCDC9Q9Y3X0 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC20.53■□□□□ 0.88
CCDC9Q9Y3X0 AC100850.1-201ENST00000506768 649 ntBASIC20.53■□□□□ 0.88
CCDC9Q9Y3X0 NPM1P43-201ENST00000558669 786 ntBASIC20.53■□□□□ 0.88
CCDC9Q9Y3X0 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC20.53■□□□□ 0.88
CCDC9Q9Y3X0 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC20.53■□□□□ 0.88
CCDC9Q9Y3X0 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
CCDC9Q9Y3X0 WDR7-208ENST00000589935 544 ntTSL 4 BASIC20.53■□□□□ 0.88
CCDC9Q9Y3X0 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC20.53■□□□□ 0.88
CCDC9Q9Y3X0 AC020922.3-201ENST00000595064 547 ntBASIC20.53■□□□□ 0.88
CCDC9Q9Y3X0 AC073413.1-201ENST00000603927 732 ntBASIC20.53■□□□□ 0.88
CCDC9Q9Y3X0 ZACNP1-201ENST00000612259 710 ntBASIC20.53■□□□□ 0.88
CCDC9Q9Y3X0 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC9Q9Y3X0 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC20.53■□□□□ 0.88
CCDC9Q9Y3X0 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC20.53■□□□□ 0.88
CCDC9Q9Y3X0 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC9Q9Y3X0 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC9Q9Y3X0 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
CCDC9Q9Y3X0 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms