Protein–RNA interactions for Protein: Q9Y2X8

UBE2D4, Ubiquitin-conjugating enzyme E2 D4, humanhuman

Predictions only

Length 147 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4Q9Y2X8 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
UBE2D4Q9Y2X8 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC10.9□□□□□ -0.66
UBE2D4Q9Y2X8 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC10.9□□□□□ -0.66
UBE2D4Q9Y2X8 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC10.9□□□□□ -0.66
UBE2D4Q9Y2X8 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC10.9□□□□□ -0.66
UBE2D4Q9Y2X8 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
UBE2D4Q9Y2X8 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC10.9□□□□□ -0.66
UBE2D4Q9Y2X8 AC097359.3-201ENST00000603982 1210 ntBASIC10.9□□□□□ -0.66
UBE2D4Q9Y2X8 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC10.9□□□□□ -0.66
UBE2D4Q9Y2X8 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC10.9□□□□□ -0.66
UBE2D4Q9Y2X8 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC10.9□□□□□ -0.66
UBE2D4Q9Y2X8 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
UBE2D4Q9Y2X8 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
UBE2D4Q9Y2X8 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
UBE2D4Q9Y2X8 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
UBE2D4Q9Y2X8 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
UBE2D4Q9Y2X8 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
UBE2D4Q9Y2X8 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
UBE2D4Q9Y2X8 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
UBE2D4Q9Y2X8 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC10.9□□□□□ -0.66
UBE2D4Q9Y2X8 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
UBE2D4Q9Y2X8 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
UBE2D4Q9Y2X8 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
UBE2D4Q9Y2X8 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.66
UBE2D4Q9Y2X8 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
UBE2D4Q9Y2X8 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC10.9□□□□□ -0.67
UBE2D4Q9Y2X8 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC10.9□□□□□ -0.67
UBE2D4Q9Y2X8 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC10.9□□□□□ -0.67
UBE2D4Q9Y2X8 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC10.9□□□□□ -0.67
UBE2D4Q9Y2X8 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 KCP-203ENST00000610776 5108 ntTSL 5 BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 ACE3P-201ENST00000423435 1973 ntBASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 CICP4-201ENST00000447359 2812 ntBASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 FAM220BP-201ENST00000377689 816 ntBASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 CBR1-202ENST00000399191 838 ntTSL 3 BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 AC079781.3-201ENST00000449110 356 ntBASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 AC112191.1-201ENST00000523689 701 ntBASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 MAL2-202ENST00000531508 892 ntTSL 3 BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 AC018845.2-201ENST00000568326 409 ntBASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 LITAF-211ENST00000572255 516 ntTSL 4 BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 CALM3-211ENST00000598871 561 ntTSL 4 BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 NKG7-205ENST00000600427 520 ntTSL 3 BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC10.89□□□□□ -0.67
UBE2D4Q9Y2X8 AC067750.1-201ENST00000608826 6545 ntBASIC10.89□□□□□ -0.67
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms