Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 FAM45BP-202ENST00000592932 1624 ntBASIC16.67■□□□□ 0.26
SIX2Q9NPC8 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
SIX2Q9NPC8 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 FAM8A3P-201ENST00000427218 844 ntBASIC16.66■□□□□ 0.26
SIX2Q9NPC8 RASL12-203ENST00000434605 982 ntTSL 2 BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 GAPDHP40-201ENST00000505218 1006 ntBASIC16.66■□□□□ 0.26
SIX2Q9NPC8 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 FTH1-202ENST00000526640 786 ntTSL 2 BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 PRR29-204ENST00000577953 565 ntTSL 4 BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 SRD5A3P1-201ENST00000603021 949 ntBASIC16.66■□□□□ 0.26
SIX2Q9NPC8 AC006538.3-201ENST00000612495 578 ntBASIC16.66■□□□□ 0.26
SIX2Q9NPC8 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 AC093512.1-201ENST00000617969 520 ntBASIC16.66■□□□□ 0.26
SIX2Q9NPC8 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 GPR39-203ENST00000622084 900 ntTSL 5 BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 ING5-213ENST00000636051 4199 ntTSL 5 BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC16.66■□□□□ 0.26
SIX2Q9NPC8 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SIX2Q9NPC8 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SIX2Q9NPC8 AL390755.1-201ENST00000623716 2027 ntBASIC16.65■□□□□ 0.26
SIX2Q9NPC8 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SIX2Q9NPC8 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
SIX2Q9NPC8 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SIX2Q9NPC8 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SIX2Q9NPC8 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
SIX2Q9NPC8 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SIX2Q9NPC8 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
SIX2Q9NPC8 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC16.65■□□□□ 0.26
SIX2Q9NPC8 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SIX2Q9NPC8 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SIX2Q9NPC8 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SIX2Q9NPC8 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
SIX2Q9NPC8 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SIX2Q9NPC8 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SIX2Q9NPC8 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SIX2Q9NPC8 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SIX2Q9NPC8 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SIX2Q9NPC8 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC16.65■□□□□ 0.26
SIX2Q9NPC8 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC16.65■□□□□ 0.26
SIX2Q9NPC8 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC16.65■□□□□ 0.26
SIX2Q9NPC8 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SIX2Q9NPC8 ZBTB45P1-201ENST00000452761 1456 ntBASIC16.65■□□□□ 0.26
SIX2Q9NPC8 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
SIX2Q9NPC8 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC16.65■□□□□ 0.26
SIX2Q9NPC8 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
SIX2Q9NPC8 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SIX2Q9NPC8 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SIX2Q9NPC8 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC16.65■□□□□ 0.26
SIX2Q9NPC8 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC16.65■□□□□ 0.26
SIX2Q9NPC8 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
SIX2Q9NPC8 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
SIX2Q9NPC8 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SIX2Q9NPC8 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.65■□□□□ 0.26
SIX2Q9NPC8 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
SIX2Q9NPC8 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.26
SIX2Q9NPC8 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
SIX2Q9NPC8 AC022144.1-201ENST00000602255 1580 ntBASIC16.64■□□□□ 0.25
SIX2Q9NPC8 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
SIX2Q9NPC8 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
SIX2Q9NPC8 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SIX2Q9NPC8 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
SIX2Q9NPC8 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SIX2Q9NPC8 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SIX2Q9NPC8 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms