Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
VTA1Q9NP79 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VTA1Q9NP79 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
VTA1Q9NP79 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VTA1Q9NP79 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VTA1Q9NP79 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
VTA1Q9NP79 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
VTA1Q9NP79 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.27■□□□□ 0.36
VTA1Q9NP79 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VTA1Q9NP79 CROCCP1-201ENST00000426910 5675 ntBASIC17.27■□□□□ 0.36
VTA1Q9NP79 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
VTA1Q9NP79 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
VTA1Q9NP79 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VTA1Q9NP79 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VTA1Q9NP79 RPL5P21-201ENST00000404620 815 ntBASIC17.27■□□□□ 0.36
VTA1Q9NP79 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC17.27■□□□□ 0.36
VTA1Q9NP79 EIF3FP3-201ENST00000434851 1086 ntBASIC17.27■□□□□ 0.36
VTA1Q9NP79 FAM8A4P-201ENST00000435433 1213 ntBASIC17.27■□□□□ 0.36
VTA1Q9NP79 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC17.27■□□□□ 0.36
VTA1Q9NP79 AC022616.1-201ENST00000518688 554 ntBASIC17.27■□□□□ 0.36
VTA1Q9NP79 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
VTA1Q9NP79 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC17.27■□□□□ 0.36
VTA1Q9NP79 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
VTA1Q9NP79 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
VTA1Q9NP79 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
VTA1Q9NP79 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC17.27■□□□□ 0.36
VTA1Q9NP79 AC244452.3-201ENST00000636814 210 ntBASIC17.27■□□□□ 0.36
VTA1Q9NP79 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VTA1Q9NP79 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
VTA1Q9NP79 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC17.27■□□□□ 0.36
VTA1Q9NP79 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VTA1Q9NP79 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VTA1Q9NP79 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
VTA1Q9NP79 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
VTA1Q9NP79 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VTA1Q9NP79 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC17.27■□□□□ 0.35
VTA1Q9NP79 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
VTA1Q9NP79 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
VTA1Q9NP79 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VTA1Q9NP79 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
VTA1Q9NP79 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
VTA1Q9NP79 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
VTA1Q9NP79 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
VTA1Q9NP79 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC17.26■□□□□ 0.35
VTA1Q9NP79 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
VTA1Q9NP79 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VTA1Q9NP79 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
VTA1Q9NP79 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VTA1Q9NP79 AC024909.3-201ENST00000611513 2257 ntBASIC17.26■□□□□ 0.35
VTA1Q9NP79 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC17.26■□□□□ 0.35
VTA1Q9NP79 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VTA1Q9NP79 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC17.26■□□□□ 0.35
VTA1Q9NP79 AL391005.1-201ENST00000623953 2435 ntBASIC17.26■□□□□ 0.35
VTA1Q9NP79 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.26■□□□□ 0.35
VTA1Q9NP79 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VTA1Q9NP79 MIR663B-201ENST00000408361 115 ntBASIC17.26■□□□□ 0.35
VTA1Q9NP79 KRTAP10-13P-201ENST00000412914 571 ntBASIC17.26■□□□□ 0.35
VTA1Q9NP79 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC17.26■□□□□ 0.35
VTA1Q9NP79 AC079178.1-201ENST00000420915 656 ntBASIC17.26■□□□□ 0.35
VTA1Q9NP79 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC17.26■□□□□ 0.35
VTA1Q9NP79 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC17.26■□□□□ 0.35
VTA1Q9NP79 AC091804.1-201ENST00000486888 567 ntBASIC17.26■□□□□ 0.35
VTA1Q9NP79 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VTA1Q9NP79 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC17.26■□□□□ 0.35
VTA1Q9NP79 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
VTA1Q9NP79 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VTA1Q9NP79 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VTA1Q9NP79 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VTA1Q9NP79 AL023775.1-201ENST00000454907 1746 ntBASIC17.26■□□□□ 0.35
VTA1Q9NP79 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC17.26■□□□□ 0.35
VTA1Q9NP79 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC17.26■□□□□ 0.35
VTA1Q9NP79 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
VTA1Q9NP79 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
VTA1Q9NP79 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VTA1Q9NP79 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
VTA1Q9NP79 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
VTA1Q9NP79 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC17.25■□□□□ 0.35
VTA1Q9NP79 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC17.25■□□□□ 0.35
VTA1Q9NP79 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VTA1Q9NP79 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
VTA1Q9NP79 ANKRD30BP2-201ENST00000435744 1610 ntBASIC17.25■□□□□ 0.35
VTA1Q9NP79 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VTA1Q9NP79 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
VTA1Q9NP79 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VTA1Q9NP79 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC17.25■□□□□ 0.35
VTA1Q9NP79 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17.25■□□□□ 0.35
VTA1Q9NP79 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VTA1Q9NP79 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
VTA1Q9NP79 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VTA1Q9NP79 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC17.25■□□□□ 0.35
VTA1Q9NP79 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC17.25■□□□□ 0.35
VTA1Q9NP79 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
VTA1Q9NP79 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VTA1Q9NP79 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
VTA1Q9NP79 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC17.25■□□□□ 0.35
VTA1Q9NP79 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VTA1Q9NP79 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC17.25■□□□□ 0.35
VTA1Q9NP79 HSPB1P2-201ENST00000448722 546 ntBASIC17.25■□□□□ 0.35
VTA1Q9NP79 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VTA1Q9NP79 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms